Variant report

Variant	rs9459664
Chromosome Location	chr6:166822796-166822797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166822277..166824260-chr6:166826343..166828176,2	K562	blood:
2	chr6:166752864..166754601-chr6:166821348..166823420,2	K562	blood:
3	chr6:166821049..166824260-chr6:166825235..166828176,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10806849	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2235295	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235296	0.92[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2235297	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2984	0.88[CEU][hapmap];0.80[CHB][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs6904288	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6925364	0.83[CEU][hapmap];0.83[GIH][hapmap];0.82[MEX][hapmap]
rs6925920	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs6934944	0.85[CEU][hapmap]
rs760670	0.92[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs909631	0.91[CEU][hapmap];0.84[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs9348130	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9355577	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9355578	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3437905	chr6:166820362-166824660	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166824000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
5	chr6:166814600-166824800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:166816600-166823000	Weak transcription	Osteobl	bone
7	chr6:166816600-166827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:166816600-166833000	Weak transcription	HSMM	muscle
9	chr6:166816800-166825000	Weak transcription	NHLF	lung
10	chr6:166816800-166832400	Weak transcription	NH-A	brain
11	chr6:166817000-166823800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:166817000-166829000	Weak transcription	NHDF-Ad	bronchial
13	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:166817400-166823600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:166820200-166823000	Weak transcription	Thymus	Thymus
16	chr6:166820200-166825000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:166820600-166829400	Weak transcription	HSMMtube	muscle
18	chr6:166821000-166825000	Weak transcription	Adipose Nuclei	Adipose
19	chr6:166821000-166832200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:166821400-166825000	Enhancers	Fetal Thymus	thymus
21	chr6:166821600-166825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:166821600-166829200	Weak transcription	Fetal Kidney	kidney
23	chr6:166821800-166829600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:166821800-166833800	Weak transcription	Stomach Mucosa	stomach
25	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr6:166822000-166822800	Strong transcription	Right Ventricle	heart
27	chr6:166822000-166823400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:166822000-166825400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:166822000-166829000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:166822000-166833800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
32	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:166822200-166822800	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:166822200-166822800	Strong transcription	Brain Angular Gyrus	brain
35	chr6:166822200-166822800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:166822200-166822800	Enhancers	Fetal Brain Male	brain
37	chr6:166822200-166822800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr6:166822200-166823000	Strong transcription	Brain Anterior Caudate	brain
39	chr6:166822200-166823200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:166822200-166823400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:166822200-166823400	Strong transcription	Pancreas	Pancrea
42	chr6:166822200-166827400	Strong transcription	Brain Germinal Matrix	brain
43	chr6:166822200-166830000	Strong transcription	Brain Cingulate Gyrus	brain
44	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:166822400-166822800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:166822400-166822800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:166822400-166822800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:166822400-166823000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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