Variant report

Variant	rs6936691
Chromosome Location	chr6:144719456-144719457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX11-5	chr6:144719095-144719888	NONHSAT115382

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11965745	1.00[ASN][1000 genomes]
rs2223428	1.00[ASN][1000 genomes]
rs2328570	1.00[ASN][1000 genomes]
rs4301321	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs4538732	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4546509	1.00[ASN][1000 genomes]
rs57580585	1.00[ASN][1000 genomes]
rs59893699	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570627	1.00[YRI][hapmap]
rs6902637	1.00[ASN][1000 genomes]
rs6910059	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6920327	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7738289	0.85[YRI][hapmap]
rs7745285	0.84[LWK][hapmap]
rs7748278	1.00[ASN][1000 genomes]
rs7755700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7776211	0.85[YRI][hapmap]
rs9321973	1.00[ASN][1000 genomes]
rs9484868	1.00[ASN][1000 genomes]
rs9484871	1.00[ASN][1000 genomes]
rs9484873	1.00[ASN][1000 genomes]
rs9496948	0.85[LWK][hapmap]
rs9496950	0.85[LWK][hapmap]
rs9496951	1.00[ASN][1000 genomes]
rs9496952	1.00[ASN][1000 genomes]
rs9496953	1.00[ASN][1000 genomes]
rs9496954	0.81[ASW][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496955	0.95[AFR][1000 genomes]
rs9496956	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496961	1.00[ASN][1000 genomes]
rs9496964	0.82[YRI][hapmap]
rs9496965	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144697200-144732600	Weak transcription	Gastric	stomach
2	chr6:144702800-144720600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:144705800-144722600	Weak transcription	Psoas Muscle	Psoas
4	chr6:144711800-144728000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:144712000-144726400	Weak transcription	HSMMtube	muscle
6	chr6:144712400-144720800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144712400-144722800	Weak transcription	Right Ventricle	heart
8	chr6:144712600-144732600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:144714400-144720800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:144715200-144720600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:144715200-144722800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:144715400-144719600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:144716800-144721600	Weak transcription	NHLF	lung
14	chr6:144716800-144726400	Weak transcription	HUVEC	blood vessel
15	chr6:144716800-144729200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:144717000-144726800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:144717400-144720000	ZNF genes & repeats	GM12878-XiMat	blood
18	chr6:144717400-144729400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:144717800-144719800	ZNF genes & repeats	HepG2	liver
20	chr6:144718200-144720000	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr6:144718400-144719800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr6:144718400-144720000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:144718400-144720200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:144718600-144719800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:144718600-144720000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
26	chr6:144718600-144720000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr6:144718600-144720200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:144718800-144719600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:144718800-144719600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:144718800-144719600	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr6:144718800-144719600	ZNF genes & repeats	Fetal Thymus	thymus
32	chr6:144718800-144719600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:144718800-144719600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr6:144718800-144719800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:144718800-144719800	ZNF genes & repeats	Dnd41	blood
36	chr6:144718800-144720000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr6:144719000-144719600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:144719000-144719600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:144719000-144719600	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr6:144719000-144719600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:144719000-144719600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
42	chr6:144719000-144719600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
43	chr6:144719000-144719600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:144719000-144719600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:144719000-144719600	ZNF genes & repeats	Liver	Liver
46	chr6:144719000-144719600	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr6:144719000-144719600	ZNF genes & repeats	Left Ventricle	heart
48	chr6:144719000-144719600	Strong transcription	Thymus	Thymus
49	chr6:144719000-144719600	ZNF genes & repeats	HSMM	muscle
50	chr6:144719000-144719600	ZNF genes & repeats	NHDF-Ad	bronchial

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