Variant report

Variant	rs6937622
Chromosome Location	chr6:34204285-34204286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:34204135-34205242	H1-neurons	neurons:	n/a	n/a
2	RELA	chr6:34203505-34205066	GM15510	blood:	n/a	n/a
3	TBL1XR1	chr6:34203875-34204780	K562	blood:	n/a	n/a
4	SIN3AK20	chr6:34203919-34204845	H1-hESC	embryonic stem cell:	n/a	n/a
5	TAF1	chr6:34204218-34205201	GM12878	blood:	n/a	n/a
6	CBX3	chr6:34202931-34204843	K562	blood:	n/a	n/a
7	POLR2A	chr6:34203343-34205254	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:34203117-34205616	HUVEC	blood vessel:	n/a	n/a
9	MAZ	chr6:34203019-34207012	IMR90	lung:	n/a	chr6:34204880-34204890 chr6:34203551-34203560 chr6:34205860-34205870 chr6:34203490-34203500 chr6:34203292-34203301 chr6:34204259-34204269 chr6:34203144-34203153 chr6:34204281-34204291 chr6:34203350-34203360 chr6:34203214-34203224 chr6:34204380-34204390 chr6:34203274-34203284 chr6:34203291-34203302 chr6:34205964-34205973
10	YY1	chr6:34204178-34205087	K562	blood:	n/a	chr6:34204588-34204597 chr6:34204934-34204943 chr6:34204629-34204640 chr6:34204280-34204294 chr6:34204935-34204946 chr6:34204937-34204946 chr6:34204931-34204945 chr6:34204190-34204199
11	TAF7	chr6:34204063-34204805	K562	blood:	n/a	n/a
12	MAX	chr6:34203203-34206196	Hela-S3	cervix:	n/a	chr6:34204880-34204890 chr6:34203551-34203560 chr6:34205860-34205870 chr6:34203490-34203500 chr6:34203292-34203301 chr6:34204259-34204269 chr6:34204281-34204291 chr6:34203350-34203360 chr6:34203214-34203224 chr6:34204380-34204390 chr6:34203274-34203284 chr6:34203291-34203302 chr6:34205964-34205973
13	TBP	chr6:34203832-34204845	Hela-S3	cervix:	n/a	n/a
14	MXI1	chr6:34203802-34206722	SK-N-SH	brain:	n/a	n/a
15	ELK1	chr6:34204262-34204499	K562	blood:	n/a	n/a
16	STAT5A	chr6:34203393-34204787	GM12878	blood:	n/a	chr6:34204350-34204358 chr6:34203708-34203720
17	POLR2A	chr6:34203392-34205111	HL-60	blood:	n/a	n/a
18	TEAD4	chr6:34203108-34204787	ECC-1	luminal epithelium:	n/a	chr6:34203389-34203398
19	IRF1	chr6:34204039-34204924	K562	blood:	n/a	chr6:34204584-34204598 chr6:34204065-34204072 chr6:34204066-34204078
20	CHD1	chr6:34203488-34205101	GM12878	blood:	n/a	n/a
21	RUNX3	chr6:34203507-34205139	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:34202560-34206869	GM12878	blood:	n/a	n/a
23	CTCF	chr6:34204160-34204310	GM06990	blood:	n/a	n/a
24	POLR2A	chr6:34203358-34204754	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr6:34203470-34204683	K562	blood:	n/a	chr6:34203549-34203563
26	JUND	chr6:34203138-34204854	K562	blood:	n/a	chr6:34203548-34203559 chr6:34203356-34203365 chr6:34203551-34203562 chr6:34204284-34204293 chr6:34203935-34203945 chr6:34203550-34203561 chr6:34204283-34204292 chr6:34204175-34204187 chr6:34204101-34204110 chr6:34203935-34203945 chr6:34204287-34204296 chr6:34203552-34203561
27	RCOR1	chr6:34204278-34205035	K562	blood:	n/a	n/a
28	SIN3A	chr6:34203878-34204586	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:34202499-34204631	K562	blood:	n/a	n/a
30	SP1	chr6:34202904-34205143	HCT-116	colon:	n/a	chr6:34203428-34203438 chr6:34203331-34203345 chr6:34202982-34202992 chr6:34203491-34203505 chr6:34203272-34203286 chr6:34203429-34203438 chr6:34204587-34204596 chr6:34204829-34204843 chr6:34203271-34203283 chr6:34202982-34202991 chr6:34203017-34203031 chr6:34203428-34203437 chr6:34204587-34204597 chr6:34203271-34203282 chr6:34204586-34204598 chr6:34202982-34202996 chr6:34204587-34204596 chr6:34204586-34204598 chr6:34203342-34203353 chr6:34203272-34203281 chr6:34204858-34204867 chr6:34204587-34204597 chr6:34202981-34202993 chr6:34203018-34203027 chr6:34203272-34203282 chr6:34203017-34203026 chr6:34203149-34203158 chr6:34203494-34203506 chr6:34203349-34203361 chr6:34203024-34203038 chr6:34204588-34204597 chr6:34203271-34203283 chr6:34202981-34202993 chr6:34203017-34203027 chr6:34204586-34204597 chr6:34203060-34203069 chr6:34203361-34203375 chr6:34203016-34203028 chr6:34203016-34203028 chr6:34203427-34203439 chr6:34204287-34204299 chr6:34203149-34203158 chr6:34203148-34203157 chr6:34203273-34203282 chr6:34204587-34204601 chr6:34202982-34202992 chr6:34203362-34203371 chr6:34202983-34202992 chr6:34203004-34203011
31	MAX	chr6:34202491-34204661	H1-hESC	embryonic stem cell:	n/a	chr6:34203551-34203560 chr6:34203490-34203500 chr6:34203292-34203301 chr6:34204259-34204269 chr6:34203144-34203153 chr6:34204281-34204291 chr6:34203350-34203360 chr6:34203214-34203224 chr6:34204380-34204390 chr6:34203274-34203284 chr6:34203291-34203302
32	POLR2A	chr6:34203206-34205207	HUVEC	blood vessel:	n/a	n/a
33	POLR2A	chr6:34204256-34204702	Gliobla	brain:	n/a	n/a
34	GATA1	chr6:34203577-34204660	PBDE	blood:	n/a	n/a
35	POLR2A	chr6:34202991-34206807	K562	blood:	n/a	n/a
36	POLR2A	chr6:34204133-34206162	MCF-7	breast:	n/a	n/a
37	POLR2A	chr6:34204221-34205102	MCF-7	breast:	n/a	n/a
38	SP1	chr6:34204078-34205016	GM12878	blood:	n/a	chr6:34204587-34204596 chr6:34204829-34204843 chr6:34204587-34204597 chr6:34204586-34204598 chr6:34204587-34204596 chr6:34204586-34204598 chr6:34204858-34204867 chr6:34204587-34204597 chr6:34204588-34204597 chr6:34204586-34204597 chr6:34204287-34204299 chr6:34204587-34204601
39	CTCF	chr6:34204160-34204310	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:34203014-34204975	K562	blood:	n/a	n/a
41	BCLAF1	chr6:34203716-34204767	GM12878	blood:	n/a	n/a
42	CEBPB	chr6:34204185-34204635	GM12878	blood:	n/a	n/a
43	USF2	chr6:34203576-34204597	GM12878	blood:	n/a	n/a
44	TBL1XR1	chr6:34204022-34205112	GM12878	blood:	n/a	n/a
45	HCFC1	chr6:34203038-34205178	Hela-S3	cervix:	n/a	n/a
46	MAX	chr6:34202518-34205217	HCT-116	colon:	n/a	chr6:34204880-34204890 chr6:34203551-34203560 chr6:34203490-34203500 chr6:34203292-34203301 chr6:34204259-34204269 chr6:34203144-34203153 chr6:34204281-34204291 chr6:34203350-34203360 chr6:34203214-34203224 chr6:34204380-34204390 chr6:34203274-34203284 chr6:34203291-34203302
47	TCF12	chr6:34203273-34204851	A549	lung:	n/a	n/a
48	MYC	chr6:34203123-34204975	K562	blood:	n/a	chr6:34204880-34204890 chr6:34203551-34203560 chr6:34203490-34203500 chr6:34203292-34203301 chr6:34204259-34204269 chr6:34203144-34203153 chr6:34204281-34204291 chr6:34203350-34203360 chr6:34203214-34203224 chr6:34204380-34204390 chr6:34203274-34203284 chr6:34203291-34203302
49	POLR2A	chr6:34203611-34204947	MCF10A-Er-Src	breast:	n/a	n/a
50	EGR1	chr6:34204235-34204757	ECC-1	luminal epithelium:	n/a	chr6:34204455-34204462 chr6:34204587-34204597 chr6:34204450-34204464 chr6:34204422-34204436 chr6:34204448-34204463 chr6:34204288-34204298 chr6:34204283-34204293 chr6:34204450-34204461

No.	Distal block	Cell Line	Cell type
1	chr6:34202426..34206348-chr6:34246132..34251181,8	K562	blood:
2	chr6:34202622..34206817-chr6:34391790..34393979,3	MCF-7	breast:
3	chr3:156392161..156392699-chr6:34204120..34204941,2	Hela-S3	cervix:
4	chr6:32935087..32937260-chr6:34203527..34205699,2	K562	blood:
5	chr6:34202422..34206409-chr6:34359682..34362061,4	MCF-7	breast:
6	chr6:26030302..26034233-chr6:34203696..34206879,3	K562	blood:
7	chr6:34204016..34204516-chr6:86353287..86353909,2	Hela-S3	cervix:
8	chr6:34202333..34204420-chr6:34346794..34349148,2	K562	blood:
9	chr6:34204142..34204871-chr8:145734847..145735360,2	HCT-116	colon:
10	chr6:34203686..34207490-chr6:34388234..34395019,9	K562	blood:
11	chr11:62609122..62609720-chr6:34204185..34204725,2	Hela-S3	cervix:
12	chr6:27114807..27116319-chr6:34202953..34205471,2	K562	blood:
13	chr6:34204127..34204964-chr9:131790137..131790828,2	Hela-S3	cervix:
14	chr6:34201904..34204640-chr6:34398634..34402211,3	K562	blood:
15	chr1:249120210..249121150-chr6:34204127..34204729,2	Hela-S3	cervix:
16	chr6:34203144..34206658-chr6:34358641..34361602,5	MCF-7	breast:
17	chr6:34203584..34206226-chr6:34392090..34394590,2	K562	blood:
18	chr6:33383299..33386120-chr6:34202398..34204899,2	K562	blood:
19	chr6:34201904..34204640-chr6:34398022..34401494,3	K562	blood:
20	chr6:34203866..34208750-chr6:34388488..34394053,10	MCF-7	breast:
21	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
22	chr6:32939896..32942243-chr6:34202585..34204574,3	K562	blood:
23	chr6:34204158..34206160-chr6:34249084..34250799,2	K562	blood:
24	chr6:34202852..34208935-chr6:34358420..34361531,11	K562	blood:
25	chr22:42371294..42372795-chr6:34203726..34205755,2	K562	blood:
26	chr11:33061352..33062092-chr6:34204110..34205009,2	Hela-S3	cervix:
27	chr6:33587172..33590152-chr6:34203876..34205466,2	K562	blood:
28	chr6:34202035..34205684-chr6:35227191..35229008,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGA1-1	chr6:34203881-34204471	XLOC_005264

Variant related genes	Relation type
HMGA1	TF binding region
ENSG00000265565	Chromatin interaction
ENSG00000167700	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000148341	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000100167	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000096433	Chromatin interaction
ENSG00000264500	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000176148	Chromatin interaction
ENSG00000135316	Chromatin interaction
ENSG00000175137	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000225339	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1759627	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1759645	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2483211	0.88[AMR][1000 genomes]
rs2797967	0.88[AMR][1000 genomes]
rs57026767	0.85[AMR][1000 genomes]
rs9366846	0.87[AMR][1000 genomes]
rs9394201	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv885782	chr6:34187206-34209516	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv885783	chr6:34187206-34209844	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv885784	chr6:34187206-34246714	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
9	nsv823666	chr6:34201401-34207549	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	esv3444763	chr6:34201999-34204747	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	esv3486811	chr6:34202024-34204622	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	esv3486812	chr6:34202024-34204622	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
13	esv10483	chr6:34202138-34206094	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
14	esv3433952	chr6:34203174-34207622	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
15	nsv602864	chr6:34203406-34204532	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
16	esv1839345	chr6:34203406-34205952	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
17	nsv602865	chr6:34203406-34217181	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
18	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv602866	chr6:34203630-34205952	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
20	nsv602867	chr6:34203630-34206034	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv602868	chr6:34203842-34206034	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
22	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
23	esv1840179	chr6:34204285-34205408	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
24	esv1842689	chr6:34204285-34205952	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
25	nsv602869	chr6:34204285-34205952	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
26	esv1798463	chr6:34204285-34206034	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
27	esv1836587	chr6:34204285-34206034	Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
28	esv1843127	chr6:34204285-34206034	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
29	esv1846022	chr6:34204285-34206034	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
30	nsv602870	chr6:34204285-34206034	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
31	esv1840881	chr6:34204285-34231570	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
32	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
33	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34192600-34204400	Weak transcription	HSMMtube	muscle
2	chr6:34202400-34207000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:34202400-34207400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:34202400-34207400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:34202600-34206000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:34202600-34206000	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:34202600-34206200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:34202600-34206200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:34202600-34206800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:34202800-34206000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:34202800-34206000	Active TSS	Thymus	Thymus
12	chr6:34202800-34206200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr6:34202800-34206400	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:34202800-34206800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:34202800-34206800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:34202800-34206800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:34203000-34204600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:34203000-34205400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:34203200-34204400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr6:34203200-34205400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:34203200-34206200	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr6:34203200-34206400	Active TSS	Small Intestine	intestine
23	chr6:34203400-34204400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:34203400-34204400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr6:34203400-34204400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:34203400-34204400	Flanking Active TSS	Fetal Thymus	thymus
27	chr6:34203400-34204400	Flanking Active TSS	Hela-S3	cervix
28	chr6:34203400-34204600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:34203400-34204600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr6:34203400-34204600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr6:34203400-34204600	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr6:34203400-34204600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:34203400-34204600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr6:34203400-34204600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:34203400-34204600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:34203400-34204600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:34203400-34204600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:34203400-34204600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:34203400-34204600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:34203400-34204600	Flanking Active TSS	Colonic Mucosa	Colon
41	chr6:34203400-34204600	Enhancers	Fetal Heart	heart
42	chr6:34203400-34204600	Transcr. at gene 5' and 3'	Right Atrium	heart
43	chr6:34203400-34204600	Flanking Active TSS	Right Ventricle	heart
44	chr6:34203400-34204600	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr6:34203400-34204600	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:34203400-34204600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:34203400-34204600	Flanking Active TSS	NH-A	brain
48	chr6:34203400-34204800	Flanking Active TSS	Fetal Muscle Leg	muscle
49	chr6:34203400-34205600	Active TSS	Brain Germinal Matrix	brain
50	chr6:34203400-34206200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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