Variant report

Variant	rs6938612
Chromosome Location	chr6:133509592-133509593
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17062190	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55727060	1.00[EUR][1000 genomes]
rs56736558	1.00[EUR][1000 genomes]
rs57189941	1.00[EUR][1000 genomes]
rs58067643	1.00[EUR][1000 genomes]
rs73773543	1.00[EUR][1000 genomes]
rs73773544	1.00[EUR][1000 genomes]
rs73773545	1.00[EUR][1000 genomes]
rs73773549	1.00[EUR][1000 genomes]
rs73773550	1.00[EUR][1000 genomes]
rs9493495	1.00[EUR][1000 genomes]
rs9493551	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv524926	chr6:133492507-133510691	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv464058	chr6:133492507-133527935	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv604698	chr6:133492507-133527935	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133508200-133509600	Enhancers	Fetal Kidney	kidney
2	chr6:133508600-133509600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133508600-133512200	Weak transcription	Fetal Lung	lung
4	chr6:133508800-133509600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:133508800-133509600	Enhancers	NH-A	brain
6	chr6:133508800-133509600	Enhancers	Osteobl	bone
7	chr6:133508800-133510800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:133509000-133509600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:133509000-133509800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:133509000-133510200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr6:133509000-133510200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:133509000-133510400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:133509000-133510800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:133509000-133510800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:133509000-133510800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:133509200-133509800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:133509200-133512000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:133509400-133510200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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