Variant report

Variant	rs73773544
Chromosome Location	chr6:133453409-133453410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133451353..133453711-chr6:133454744..133456553,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17062190	1.00[EUR][1000 genomes]
rs55727060	1.00[EUR][1000 genomes]
rs56736558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57189941	1.00[EUR][1000 genomes]
rs58067643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938612	1.00[EUR][1000 genomes]
rs73773543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73773545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73773549	1.00[EUR][1000 genomes]
rs73773550	1.00[EUR][1000 genomes]
rs9493495	1.00[EUR][1000 genomes]
rs9493551	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133448600-133455200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:133450400-133454000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133451400-133453800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:133451400-133454200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:133451400-133454400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:133451800-133453600	Enhancers	Colon Smooth Muscle	Colon
7	chr6:133451800-133454200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:133451800-133454200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:133451800-133454200	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:133452000-133453600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:133452000-133453800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:133452000-133454200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:133452400-133453800	Enhancers	HSMM	muscle
14	chr6:133452600-133453800	Enhancers	Brain Germinal Matrix	brain
15	chr6:133452800-133454000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:133452800-133454200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:133452800-133454200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:133453000-133453800	Enhancers	Fetal Stomach	stomach
19	chr6:133453000-133454000	Enhancers	Brain Substantia Nigra	brain
20	chr6:133453200-133453800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:133453200-133454000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:133453400-133453800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:133453400-133454000	Enhancers	Brain Hippocampus Middle	brain
24	chr6:133453400-133454200	Weak transcription	Fetal Lung	lung
25	chr6:133453400-133454400	Weak transcription	Fetal Kidney	kidney
26	chr6:133453400-133454600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:133453400-133454600	Flanking Active TSS	HSMMtube	muscle

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