Variant report

Variant	rs6939418
Chromosome Location	chr6:114605418-114605419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10440870	1.00[EUR][1000 genomes]
rs17076036	1.00[EUR][1000 genomes]
rs57308480	1.00[EUR][1000 genomes]
rs57543972	1.00[EUR][1000 genomes]
rs59695521	1.00[EUR][1000 genomes]
rs59907222	1.00[EUR][1000 genomes]
rs6926449	1.00[EUR][1000 genomes]
rs73542395	1.00[EUR][1000 genomes]
rs73542398	1.00[EUR][1000 genomes]
rs73542399	1.00[EUR][1000 genomes]
rs73542402	1.00[EUR][1000 genomes]
rs73544404	1.00[EUR][1000 genomes]
rs73544406	1.00[EUR][1000 genomes]
rs73544409	1.00[EUR][1000 genomes]
rs73544410	1.00[EUR][1000 genomes]
rs73544412	1.00[EUR][1000 genomes]
rs73544421	1.00[EUR][1000 genomes]
rs73544423	1.00[EUR][1000 genomes]
rs7746252	1.00[EUR][1000 genomes]
rs7750093	1.00[EUR][1000 genomes]
rs7761174	1.00[EUR][1000 genomes]
rs9488366	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114596200-114608400	Weak transcription	HepG2	liver
2	chr6:114603000-114605600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:114603800-114607800	Weak transcription	HSMM	muscle
4	chr6:114603800-114608800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:114603800-114609000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:114603800-114618400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:114604000-114606000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:114604000-114606400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:114604000-114609600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:114604000-114612000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:114604000-114612200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:114604200-114605600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:114604600-114606000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:114604600-114606000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:114604600-114609000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:114604800-114606400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:114605000-114605600	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:114605000-114608400	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:114605000-114611600	Weak transcription	Fetal Brain Male	brain
20	chr6:114605200-114605600	Enhancers	HSMMtube	muscle
21	chr6:114605200-114617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:114605400-114605800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:114605400-114606600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links