Variant report

No.	Distal block	Cell Line	Cell type
1	6:73859137-73881637..6:73927031-73938730	Hela-S3	cervix:
2	6:73859137-73881637..6:74062967-74076046	GM12878	blood:
3	6:73859137-73881637..6:74099986-74112890	GM12878	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1815728	0.92[ASN][1000 genomes]
rs1974369	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2027544	0.98[ASN][1000 genomes]
rs2350387	0.87[GIH][hapmap]
rs2350389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35034898	0.91[ASN][1000 genomes]
rs4235874	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6453644	1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6453645	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6453646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6453648	0.94[ASN][1000 genomes]
rs6453649	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7748250	0.81[YRI][hapmap]
rs7748418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7762949	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7763514	0.87[GIH][hapmap]
rs7769085	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs884957	0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs9343011	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs947748	0.87[GIH][hapmap]
rs952880	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73856600-73876600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73863200-73876400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73863600-73878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:73867000-73884600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:73867400-73880600	Weak transcription	Aorta	Aorta
7	chr6:73867600-73890400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73867600-73890400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73867800-73876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73867800-73876800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:73869000-73904200	Weak transcription	Primary hematopoietic stem cells	blood

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