Variant report

Variant	rs7762949
Chromosome Location	chr6:73868286-73868287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:73859137-73881637..6:73927031-73938730	Hela-S3	cervix:
2	6:73859137-73881637..6:74062967-74076046	GM12878	blood:
3	6:73859137-73881637..6:74099986-74112890	GM12878	blood:

Variant related genes	Relation type
ENSG00000203908	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000256980	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000203907	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1815726	0.81[EUR][1000 genomes]
rs1815728	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1815729	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1970549	0.85[YRI][hapmap]
rs1974369	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2027544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2350387	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350389	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35034898	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235874	0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs6453644	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453645	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6453646	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6453648	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6453649	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs6939575	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7747411	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7748250	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7748418	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7763514	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7769085	0.94[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs884957	0.94[CEU][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343011	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs947747	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs947748	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1004012	chr6:73866875-73870455	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73846400-73879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73856600-73876600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73863200-73876400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73863600-73878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:73867000-73869000	Strong transcription	Primary hematopoietic stem cells	blood
6	chr6:73867000-73884600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73867400-73880600	Weak transcription	Aorta	Aorta
8	chr6:73867600-73890400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:73867600-73890400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73867800-73876400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:73867800-73876800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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