Variant report

Variant	rs694103
Chromosome Location	chr11:73657252-73657253
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11235948	0.83[ASN][1000 genomes]
rs11235956	0.81[ASN][1000 genomes]
rs12284230	0.94[ASN][1000 genomes]
rs12287418	0.85[ASN][1000 genomes]
rs12291665	0.84[ASN][1000 genomes]
rs12420040	0.83[ASN][1000 genomes]
rs1976139	0.90[ASN][1000 genomes]
rs3741138	0.83[ASN][1000 genomes]
rs3741139	0.80[ASN][1000 genomes]
rs637028	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73549968	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3441543	chr11:73650332-73658331	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640400-73659200	Weak transcription	HepG2	liver
3	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
4	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:73652600-73657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:73655200-73657600	Enhancers	Brain Anterior Caudate	brain
9	chr11:73657000-73657800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73657200-73657400	Enhancers	Brain Germinal Matrix	brain
11	chr11:73657200-73657600	Enhancers	Osteobl	bone
12	chr11:73657200-73658200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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