Variant report
| Variant | rs6944510 |
|---|---|
| Chromosome Location | chr7:14068174-14068175 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14063109..14064698-chr7:14066818..14069797,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL4A-10 | chr7:14066770-14068586 | NONHSAT119263 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11971058 | 0.83[JPT][hapmap] |
| rs13438227 | 0.82[CHB][hapmap];0.83[JPT][hapmap] |
| rs17167779 | 0.84[ASN][1000 genomes] |
| rs2190065 | 0.93[ASN][1000 genomes] |
| rs2190066 | 0.87[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28633703 | 0.83[ASN][1000 genomes] |
| rs3888604 | 0.91[ASN][1000 genomes] |
| rs4721297 | 0.89[JPT][hapmap] |
| rs62452790 | 0.87[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6954954 | 0.88[ASN][1000 genomes] |
| rs6969768 | 0.81[CHB][hapmap] |
| rs6970150 | 0.81[CHB][hapmap] |
| rs917136 | 0.87[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9639172 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030645 | chr7:14015533-14078153 | Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv538739 | chr7:14015533-14078153 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14050200-14070800 | Weak transcription | K562 | blood |
