Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10238440	0.81[CHB][hapmap]
rs10252793	0.83[ASN][1000 genomes]
rs10254238	0.91[ASN][1000 genomes]
rs10950505	0.81[ASN][1000 genomes]
rs10950506	0.82[ASN][1000 genomes]
rs11971058	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11973792	0.87[JPT][hapmap]
rs11977311	0.87[ASN][1000 genomes]
rs11978520	1.00[CEU][hapmap]
rs11983337	0.81[CHB][hapmap]
rs13438227	0.93[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17167731	1.00[CEU][hapmap]
rs1811206	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2190061	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2190065	0.89[ASN][1000 genomes]
rs2190066	0.89[ASN][1000 genomes]
rs28633703	0.81[ASN][1000 genomes]
rs3888604	0.87[ASN][1000 genomes]
rs4027217	0.86[JPT][hapmap]
rs4721297	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs60290474	0.80[EUR][1000 genomes]
rs62452790	0.89[ASN][1000 genomes]
rs6461060	0.87[ASN][1000 genomes]
rs6461065	0.81[ASN][1000 genomes]
rs6944510	0.84[ASN][1000 genomes]
rs6954954	0.92[ASN][1000 genomes]
rs6969768	0.86[JPT][hapmap]
rs6970150	0.86[JPT][hapmap]
rs6971464	1.00[CEU][hapmap]
rs7779975	0.80[EUR][1000 genomes]
rs7786627	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs917136	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9639172	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14070800-14071800	Enhancers	Fetal Intestine Small	intestine

Quick Search: