Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14083947..14086939-chr7:14087713..14089470,2	K562	blood:
2	chr7:14028438..14030730-chr7:14088561..14090365,2	K562	blood:

Variant related genes	Relation type
ENSG00000006468	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10238440	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10252793	0.81[ASN][1000 genomes]
rs10254238	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10259703	0.81[ASN][1000 genomes]
rs10950506	0.80[ASN][1000 genomes]
rs11971058	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11973792	0.81[AMR][1000 genomes]
rs13438227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17167779	0.87[ASN][1000 genomes]
rs2190061	0.81[ASN][1000 genomes]
rs2190065	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2190066	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28633703	0.83[AMR][1000 genomes]
rs3888604	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4027217	0.81[ASN][1000 genomes]
rs58447577	0.83[AMR][1000 genomes]
rs62452790	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6461060	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461065	0.81[ASN][1000 genomes]
rs6954954	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6970150	0.83[AMR][1000 genomes]
rs917136	0.82[AMR][1000 genomes]
rs9639172	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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