Variant report

Variant	rs58447577
Chromosome Location	chr7:14045124-14045125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14043274..14045344-chr7:14046379..14049349,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10251025	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10262618	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10263141	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11772292	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11972032	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11973792	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11977311	0.83[AMR][1000 genomes]
rs13438227	0.83[AMR][1000 genomes]
rs2190065	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2190066	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28633703	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3888604	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4308625	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57156278	0.81[EUR][1000 genomes]
rs58361379	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62452790	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6954954	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6969768	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6970150	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs917136	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9639172	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14044800-14045400	Flanking Active TSS	K562	blood

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