Variant report

Variant	rs4308625
Chromosome Location	chr7:14042702-14042703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:14041454..14043443-chr7:14049924..14051909,2	K562	blood:
2	chr7:14041943..14044192-chr7:14049527..14051909,2	K562	blood:
3	chr7:14039554..14043175-chr7:14045654..14048765,4	K562	blood:

Variant related genes	Relation type
ENSG00000252374	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10251025	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10262618	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10263141	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11772292	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11972032	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973792	0.94[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes]
rs13438227	0.93[CEU][hapmap]
rs17688394	0.87[CEU][hapmap]
rs2190065	0.85[AMR][1000 genomes]
rs2190066	0.83[AMR][1000 genomes]
rs28633703	0.88[AMR][1000 genomes]
rs3888604	0.83[AMR][1000 genomes]
rs57156278	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58361379	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58447577	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62452790	0.83[AMR][1000 genomes]
rs6954954	0.83[AMR][1000 genomes]
rs6969768	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6970150	0.94[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7785120	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs917136	0.88[CEU][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes]
rs9639172	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887700	chr7:13948517-14042702	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14041600-14044800	Active TSS	K562	blood
2	chr7:14041800-14043000	Active TSS	Placenta	Placenta

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