Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10254973	0.81[CEU][hapmap]
rs10262618	0.87[AMR][1000 genomes]
rs10263141	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10268435	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10271792	0.81[CEU][hapmap]
rs10275495	0.83[EUR][1000 genomes]
rs11772292	0.88[AMR][1000 genomes]
rs11971058	0.84[JPT][hapmap]
rs11972032	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11973792	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13438227	1.00[CEU][hapmap]
rs17167755	0.81[CEU][hapmap]
rs2190065	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2190066	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28633703	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3888604	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4308625	0.94[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4721297	0.89[JPT][hapmap]
rs58361379	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58447577	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62452790	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6954954	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6969768	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6970150	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7785120	0.94[CEU][hapmap]
rs917136	0.94[CEU][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9639172	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14050200-14070800	Weak transcription	K562	blood
2	chr7:14054400-14059800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:14057000-14060200	Weak transcription	Osteobl	bone
4	chr7:14058400-14058600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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