Variant report
| Variant | rs10259703 |
|---|---|
| Chromosome Location | chr7:14090857-14090858 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ARL4A-10 | chr7:14090752-14091033 | NONHSAT119263 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11973792 | 0.87[JPT][hapmap] |
| rs11977259 | 0.86[EUR][1000 genomes] |
| rs11977311 | 0.81[ASN][1000 genomes] |
| rs12532319 | 0.86[EUR][1000 genomes] |
| rs13438227 | 0.87[CHB][hapmap] |
| rs1811206 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2190061 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4308625 | 0.84[CHD][hapmap] |
| rs4721297 | 0.88[CHD][hapmap] |
| rs56062513 | 0.86[EUR][1000 genomes] |
| rs7786627 | 0.85[AMR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10259703 | CLK4 | trans | brain | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
