Variant report

Variant	rs7779975
Chromosome Location	chr7:14086106-14086107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11977259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11978520	1.00[CEU][hapmap]
rs12532319	1.00[ASN][1000 genomes]
rs17167731	1.00[CEU][hapmap]
rs17167779	0.80[EUR][1000 genomes]
rs1811206	0.85[EUR][1000 genomes]
rs2190061	0.83[EUR][1000 genomes]
rs56062513	0.96[ASN][1000 genomes]
rs59046742	0.84[ASN][1000 genomes]
rs60290474	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60732622	0.84[ASN][1000 genomes]
rs60892030	0.84[ASN][1000 genomes]
rs6971464	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs73679271	0.84[ASN][1000 genomes]
rs73679272	0.82[ASN][1000 genomes]
rs73679276	0.82[ASN][1000 genomes]
rs7786627	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3398763	chr7:14084677-14088275	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14085800-14087600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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