Variant report
| Variant | rs73679271 |
|---|---|
| Chromosome Location | chr7:14079496-14079497 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11977259 | 0.86[ASN][1000 genomes] |
| rs12531536 | 0.84[EUR][1000 genomes] |
| rs12532319 | 0.84[ASN][1000 genomes] |
| rs12535946 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12537436 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12539144 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17517039 | 0.89[EUR][1000 genomes] |
| rs2190067 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56062513 | 0.81[ASN][1000 genomes] |
| rs58711075 | 0.89[EUR][1000 genomes] |
| rs59046742 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59264572 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs60290474 | 0.84[ASN][1000 genomes] |
| rs60732622 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60892030 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73679253 | 0.89[EUR][1000 genomes] |
| rs73679254 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73679255 | 0.89[EUR][1000 genomes] |
| rs73679259 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73679269 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73679272 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73679274 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73679276 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7779975 | 0.84[ASN][1000 genomes] |
| rs7803279 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019873 | chr7:13707148-14133367 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv949467 | chr7:13938464-14279074 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14078600-14084200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
