Variant report

Variant	rs73679259
Chromosome Location	chr7:14060202-14060203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14059044..14060607-chr7:14062708..14064677,2	K562	blood:
2	chr7:14059044..14062154-chr7:14062708..14065783,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10262408	0.84[AMR][1000 genomes]
rs10262900	0.84[AMR][1000 genomes]
rs12531536	0.84[EUR][1000 genomes]
rs12535946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539144	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517039	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190067	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58711075	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59046742	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59264572	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60732622	1.00[EUR][1000 genomes]
rs60892030	1.00[EUR][1000 genomes]
rs6973062	0.80[AMR][1000 genomes]
rs6975999	0.80[AMR][1000 genomes]
rs73679253	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73679254	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73679255	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73679269	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73679271	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73679272	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73679274	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73679276	0.87[EUR][1000 genomes]
rs7788676	1.00[ASN][1000 genomes]
rs7803279	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030645	chr7:14015533-14078153	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538739	chr7:14015533-14078153	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14050200-14070800	Weak transcription	K562	blood
2	chr7:14059800-14061200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:14059800-14061800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14060000-14061000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:14060000-14061200	Enhancers	HMEC	breast
6	chr7:14060200-14060600	Enhancers	NH-A	brain
7	chr7:14060200-14060800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:14060200-14061200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:14060200-14061200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:14060200-14061200	Enhancers	Osteobl	bone
11	chr7:14060200-14061400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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