Variant report

Variant	rs6944580
Chromosome Location	chr7:26839326-26839327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10225797	0.84[AFR][1000 genomes]
rs10238303	0.84[AFR][1000 genomes]
rs10256113	1.00[AMR][1000 genomes]
rs10270501	0.84[AFR][1000 genomes]
rs17154461	0.84[AFR][1000 genomes]
rs28419173	1.00[AMR][1000 genomes]
rs28469204	1.00[AMR][1000 genomes]
rs3801836	0.81[AFR][1000 genomes]
rs4722638	0.84[AFR][1000 genomes]
rs6964094	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv887855	chr7:26823963-26872652	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:26812400-26849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:26812800-26841600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:26813000-26871200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:26821000-26843000	Weak transcription	Fetal Lung	lung
6	chr7:26823000-26846400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:26823400-26839600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:26825400-26872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:26834600-26841600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:26835400-26840200	Weak transcription	Right Atrium	heart
11	chr7:26836600-26846200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:26837400-26842800	Weak transcription	Primary B cells from cord blood	blood
13	chr7:26838400-26839400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:26839200-26839400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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