Variant report

Variant	rs10238303
Chromosome Location	chr7:26812879-26812880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10225797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225860	0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231663	0.91[YRI][hapmap]
rs10248592	0.92[YRI][hapmap]
rs10262511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10265922	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270501	0.92[YRI][hapmap];1.00[AFR][1000 genomes]
rs10271515	0.92[YRI][hapmap]
rs10277397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277439	0.92[YRI][hapmap]
rs17154348	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs17154461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722629	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4722638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6461969	1.00[CHB][hapmap]
rs6944580	0.84[AFR][1000 genomes]
rs7808068	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26806600-26829400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:26807800-26825400	Weak transcription	Lung	lung
3	chr7:26808000-26813400	Weak transcription	Ovary	ovary
4	chr7:26808000-26825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:26809000-26814600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr7:26809000-26815000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr7:26809200-26813600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:26809400-26816600	Strong transcription	Primary B cells from cord blood	blood
10	chr7:26809600-26824600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:26810200-26814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:26810400-26829000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:26810600-26813000	Weak transcription	Fetal Stomach	stomach
14	chr7:26810600-26814200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:26810600-26835200	Weak transcription	Spleen	Spleen
16	chr7:26812000-26813000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:26812000-26813000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:26812200-26813000	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:26812200-26820400	Weak transcription	Fetal Lung	lung
20	chr7:26812400-26819000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:26812400-26822200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:26812400-26849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:26812800-26822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:26812800-26822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr7:26812800-26841600	Weak transcription	Primary hematopoietic stem cells	blood

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