Variant report

Variant	rs6461969
Chromosome Location	chr7:26809002-26809003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023711	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10238303	1.00[CHB][hapmap]
rs11536406	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs12055950	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12538337	0.89[AFR][1000 genomes]
rs12672000	0.84[AFR][1000 genomes]
rs2299100	0.89[AFR][1000 genomes]
rs3801863	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs62447731	0.89[AFR][1000 genomes]
rs641968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6461968	0.80[AFR][1000 genomes]
rs73276789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278893	1.00[AMR][1000 genomes]
rs73280787	1.00[AMR][1000 genomes]
rs9638840	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:26797800-26809400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:26797800-26812000	Weak transcription	Fetal Lung	lung
6	chr7:26798200-26809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:26799600-26809400	Weak transcription	Primary B cells from cord blood	blood
8	chr7:26799800-26812000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:26800800-26809400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:26806600-26829400	Weak transcription	Adipose Nuclei	Adipose
11	chr7:26807800-26809200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:26807800-26825400	Weak transcription	Lung	lung
13	chr7:26808000-26809600	Weak transcription	Spleen	Spleen
14	chr7:26808000-26811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:26808000-26813400	Weak transcription	Ovary	ovary
16	chr7:26808000-26825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:26808800-26809600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr7:26808800-26810200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
20	chr7:26808800-26812000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:26808800-26812200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:26809000-26810600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:26809000-26814600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:26809000-26815000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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