Variant report

Variant	rs9638840
Chromosome Location	chr7:26705512-26705513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1023711	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11536406	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12055950	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12538196	0.91[EUR][1000 genomes]
rs12538337	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12672000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299100	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299104	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3735549	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801817	0.91[EUR][1000 genomes]
rs3801863	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56746976	0.91[EUR][1000 genomes]
rs58941309	0.91[EUR][1000 genomes]
rs62447704	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62447731	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62447733	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62448176	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62448179	0.91[EUR][1000 genomes]
rs62448195	0.91[EUR][1000 genomes]
rs62448201	0.88[EUR][1000 genomes]
rs62448202	0.88[EUR][1000 genomes]
rs62448203	0.88[EUR][1000 genomes]
rs641968	0.89[AFR][1000 genomes]
rs6461968	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6461969	0.89[AFR][1000 genomes]
rs73276789	0.89[AFR][1000 genomes]
rs73276798	0.89[AFR][1000 genomes]
rs73278852	0.89[AFR][1000 genomes]
rs7782107	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26678800-26715400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:26679400-26710000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:26696800-26708000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26698800-26706800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:26699200-26707000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:26699200-26707000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:26702200-26707800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:26703000-26707000	Weak transcription	Aorta	Aorta
9	chr7:26703400-26709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:26704800-26706000	Enhancers	Dnd41	blood
11	chr7:26704800-26707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:26704800-26707200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:26704800-26712800	Weak transcription	Primary B cells from cord blood	blood
14	chr7:26705000-26706400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:26705000-26707000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:26705000-26707000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:26705000-26707000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:26705000-26707000	Weak transcription	Fetal Kidney	kidney
19	chr7:26705000-26707000	Weak transcription	NHEK	skin
20	chr7:26705000-26707200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:26705000-26707200	Enhancers	Adipose Nuclei	Adipose
22	chr7:26705000-26707800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:26705000-26714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:26705000-26714600	Weak transcription	NHLF	lung
25	chr7:26705000-26716000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:26705200-26705600	Weak transcription	GM12878-XiMat	blood
28	chr7:26705200-26706400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:26705200-26707200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:26705200-26707400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:26705200-26707600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr7:26705400-26705600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr7:26705400-26706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:26705400-26707000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:26705400-26707000	Weak transcription	Liver	Liver
36	chr7:26705400-26707000	Weak transcription	Hela-S3	cervix
37	chr7:26705400-26707000	Weak transcription	HUVEC	blood vessel
38	chr7:26705400-26707200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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