Variant report

Variant	rs62448201
Chromosome Location	chr7:26909193-26909194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1023711	0.91[EUR][1000 genomes]
rs11536406	0.91[EUR][1000 genomes]
rs12055950	0.91[EUR][1000 genomes]
rs12538196	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12538337	0.91[EUR][1000 genomes]
rs12672000	0.86[EUR][1000 genomes]
rs1464969	1.00[AFR][1000 genomes]
rs17426932	0.81[AMR][1000 genomes]
rs17436813	0.81[AMR][1000 genomes]
rs2299100	0.91[EUR][1000 genomes]
rs2299104	0.91[EUR][1000 genomes]
rs3735549	0.88[EUR][1000 genomes]
rs3801817	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3801863	0.91[EUR][1000 genomes]
rs56746976	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58941309	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62447701	1.00[AFR][1000 genomes]
rs62447704	0.89[EUR][1000 genomes]
rs62447731	0.91[EUR][1000 genomes]
rs62447733	0.89[EUR][1000 genomes]
rs62448176	0.91[EUR][1000 genomes]
rs62448179	0.91[EUR][1000 genomes]
rs62448180	1.00[AFR][1000 genomes]
rs62448195	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62448196	1.00[AFR][1000 genomes]
rs62448202	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62448203	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62454256	1.00[AFR][1000 genomes]
rs6461968	0.91[EUR][1000 genomes]
rs7782107	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9638840	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26908000-26909400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:26908000-26909400	Enhancers	HMEC	breast
3	chr7:26908000-26909400	Enhancers	NHEK	skin
4	chr7:26908200-26909200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:26908200-26909200	Enhancers	HSMM	muscle
6	chr7:26908800-26909200	Flanking Active TSS	Hela-S3	cervix
7	chr7:26908800-26909400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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