Variant report

Variant	rs17436813
Chromosome Location	chr7:27062056-27062057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12674308	0.84[AMR][1000 genomes]
rs17426751	0.84[AMR][1000 genomes]
rs17426772	0.84[AMR][1000 genomes]
rs17426932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17436236	0.88[EUR][1000 genomes]
rs17436757	0.84[AMR][1000 genomes]
rs17436827	0.84[AMR][1000 genomes]
rs17448689	0.84[AMR][1000 genomes]
rs17471054	0.84[AMR][1000 genomes]
rs2301719	0.84[AMR][1000 genomes]
rs28357116	0.84[AMR][1000 genomes]
rs62446163	0.84[AMR][1000 genomes]
rs62448201	0.81[AMR][1000 genomes]
rs62454250	0.84[AMR][1000 genomes]
rs62454258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62457399	0.84[AMR][1000 genomes]
rs62457403	0.84[AMR][1000 genomes]
rs62457404	0.84[AMR][1000 genomes]
rs813501	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27048200-27064400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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