Variant report

Variant	rs62446163
Chromosome Location	chr7:26951194-26951195
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26951086..26952616-chr7:26955450..26957665,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11977871	0.88[ASN][1000 genomes]
rs12667139	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674308	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12700771	0.92[ASN][1000 genomes]
rs1560621	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17426751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426932	0.84[AMR][1000 genomes]
rs17427218	0.81[ASN][1000 genomes]
rs17436757	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17436813	0.84[AMR][1000 genomes]
rs17436827	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17437154	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17448689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17448911	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17471054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213516	0.95[ASN][1000 genomes]
rs2259141	0.96[ASN][1000 genomes]
rs2301719	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2648079	0.95[ASN][1000 genomes]
rs2693660	0.92[ASN][1000 genomes]
rs2693661	0.92[ASN][1000 genomes]
rs2693669	0.93[ASN][1000 genomes]
rs28357116	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2936424	0.96[ASN][1000 genomes]
rs2936425	0.96[ASN][1000 genomes]
rs62446164	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448205	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62454246	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62454250	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62454362	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62454371	0.86[AMR][1000 genomes]
rs62454372	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62454374	0.86[EUR][1000 genomes]
rs62454375	0.86[EUR][1000 genomes]
rs62457399	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62457403	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62457404	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706015	0.93[ASN][1000 genomes]
rs706019	0.96[ASN][1000 genomes]
rs774244	0.95[ASN][1000 genomes]
rs774249	0.93[ASN][1000 genomes]
rs774250	0.93[ASN][1000 genomes]
rs774251	0.93[ASN][1000 genomes]
rs774253	0.93[ASN][1000 genomes]
rs774256	0.95[ASN][1000 genomes]
rs774263	0.96[ASN][1000 genomes]
rs774266	0.96[ASN][1000 genomes]
rs813501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs954051	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26949600-26951200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:26950000-26952400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:26950400-26951600	Weak transcription	HepG2	liver
4	chr7:26950400-26951800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:26950400-26952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:26950400-26956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:26950400-26957400	Weak transcription	NHEK	skin
8	chr7:26950400-26957600	Weak transcription	HMEC	breast
9	chr7:26950600-26951600	Weak transcription	Hela-S3	cervix
10	chr7:26950600-26958000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:26950600-26958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:26950800-26951600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:26951000-26952000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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