Variant report

Variant	rs17427218
Chromosome Location	chr7:27074413-27074414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27071265-27080138..7:27181770-27195105	K562	blood:

Variant related genes	Relation type
ENSG00000106006	Chromatin interaction
ENSG00000254369	Chromatin interaction
ENSG00000272801	Chromatin interaction
ENSG00000273433	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000105997	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10276952	0.95[ASN][1000 genomes]
rs11977871	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12667139	0.81[ASN][1000 genomes]
rs12673984	0.94[ASN][1000 genomes]
rs12674308	0.91[ASN][1000 genomes]
rs12700771	0.86[ASN][1000 genomes]
rs12700785	0.91[ASN][1000 genomes]
rs13230726	0.80[ASN][1000 genomes]
rs17426751	0.81[ASN][1000 genomes]
rs17426772	0.81[ASN][1000 genomes]
rs17436757	0.85[ASN][1000 genomes]
rs17436827	0.88[ASN][1000 genomes]
rs17437154	0.90[ASN][1000 genomes]
rs17448689	0.83[ASN][1000 genomes]
rs17448911	0.93[ASN][1000 genomes]
rs17471054	0.83[ASN][1000 genomes]
rs213516	0.84[ASN][1000 genomes]
rs2259141	0.85[ASN][1000 genomes]
rs2301719	0.94[ASN][1000 genomes]
rs2465267	0.93[AFR][1000 genomes]
rs2648079	0.84[ASN][1000 genomes]
rs2693660	0.86[ASN][1000 genomes]
rs2693661	0.86[ASN][1000 genomes]
rs2693669	0.87[ASN][1000 genomes]
rs28357116	0.93[ASN][1000 genomes]
rs2936424	0.85[ASN][1000 genomes]
rs2936425	0.85[ASN][1000 genomes]
rs62446163	0.81[ASN][1000 genomes]
rs62446164	0.81[ASN][1000 genomes]
rs62454246	0.81[ASN][1000 genomes]
rs62454362	0.93[ASN][1000 genomes]
rs62454371	0.90[ASN][1000 genomes]
rs62454372	0.90[ASN][1000 genomes]
rs62454374	0.90[ASN][1000 genomes]
rs62454375	0.90[ASN][1000 genomes]
rs62457399	0.81[ASN][1000 genomes]
rs62457403	0.85[ASN][1000 genomes]
rs62457404	0.96[ASN][1000 genomes]
rs6948446	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6953314	0.94[ASN][1000 genomes]
rs706015	0.87[ASN][1000 genomes]
rs706019	0.85[ASN][1000 genomes]
rs774244	0.84[ASN][1000 genomes]
rs774249	0.87[ASN][1000 genomes]
rs774250	0.87[ASN][1000 genomes]
rs774251	0.87[ASN][1000 genomes]
rs774253	0.87[ASN][1000 genomes]
rs774256	0.86[ASN][1000 genomes]
rs774263	0.85[ASN][1000 genomes]
rs774266	0.85[ASN][1000 genomes]
rs813501	0.81[ASN][1000 genomes]
rs954051	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv967485	chr7:27066773-27082518	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17427218	HOXA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27073600-27074800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27074000-27074600	Enhancers	Adipose Nuclei	Adipose
3	chr7:27074400-27074600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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