Variant report

Variant	rs62454246
Chromosome Location	chr7:26971037-26971038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11977871	0.84[ASN][1000 genomes]
rs12667139	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12674308	0.81[ASN][1000 genomes]
rs12700771	0.88[ASN][1000 genomes]
rs1560621	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17426751	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17426772	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17427218	0.81[ASN][1000 genomes]
rs17436757	0.91[ASN][1000 genomes]
rs17436827	0.88[ASN][1000 genomes]
rs17448689	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17448911	0.83[ASN][1000 genomes]
rs17471054	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213516	0.91[ASN][1000 genomes]
rs2259141	0.91[ASN][1000 genomes]
rs2301719	0.84[ASN][1000 genomes]
rs2648079	0.91[ASN][1000 genomes]
rs2693660	0.88[ASN][1000 genomes]
rs2693661	0.88[ASN][1000 genomes]
rs2693669	0.89[ASN][1000 genomes]
rs28357116	0.83[ASN][1000 genomes]
rs2936424	0.91[ASN][1000 genomes]
rs2936425	0.91[ASN][1000 genomes]
rs62446163	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62446164	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62448205	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62454250	0.95[ASN][1000 genomes]
rs62454362	0.83[ASN][1000 genomes]
rs62457399	0.91[ASN][1000 genomes]
rs62457403	0.91[ASN][1000 genomes]
rs62457404	0.85[ASN][1000 genomes]
rs706015	0.89[ASN][1000 genomes]
rs706019	0.91[ASN][1000 genomes]
rs774244	0.91[ASN][1000 genomes]
rs774249	0.89[ASN][1000 genomes]
rs774250	0.89[ASN][1000 genomes]
rs774251	0.89[ASN][1000 genomes]
rs774253	0.89[ASN][1000 genomes]
rs774256	0.91[ASN][1000 genomes]
rs774263	0.91[ASN][1000 genomes]
rs774266	0.91[ASN][1000 genomes]
rs813501	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954051	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26970800-26976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:26970800-26976600	Weak transcription	NHDF-Ad	bronchial

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