Variant report

Variant	rs62446164
Chromosome Location	chr7:26953819-26953820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11977871	0.88[ASN][1000 genomes]
rs12667139	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674308	0.88[EUR][1000 genomes]
rs12700771	0.92[ASN][1000 genomes]
rs1560621	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17426751	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17426772	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17427218	0.81[ASN][1000 genomes]
rs17436757	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17436827	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17437154	0.83[EUR][1000 genomes]
rs17448689	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17448911	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17471054	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213516	0.95[ASN][1000 genomes]
rs2259141	0.96[ASN][1000 genomes]
rs2301719	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2648079	0.95[ASN][1000 genomes]
rs2693660	0.92[ASN][1000 genomes]
rs2693661	0.92[ASN][1000 genomes]
rs2693669	0.93[ASN][1000 genomes]
rs28357116	0.82[ASN][1000 genomes]
rs2936424	0.96[ASN][1000 genomes]
rs2936425	0.96[ASN][1000 genomes]
rs62446163	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448205	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62454246	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62454250	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62454362	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62454372	0.83[EUR][1000 genomes]
rs62454374	0.83[EUR][1000 genomes]
rs62454375	0.83[EUR][1000 genomes]
rs62457399	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62457403	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62457404	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706015	0.93[ASN][1000 genomes]
rs706019	0.96[ASN][1000 genomes]
rs774244	0.95[ASN][1000 genomes]
rs774249	0.93[ASN][1000 genomes]
rs774250	0.93[ASN][1000 genomes]
rs774251	0.93[ASN][1000 genomes]
rs774253	0.93[ASN][1000 genomes]
rs774256	0.95[ASN][1000 genomes]
rs774263	0.96[ASN][1000 genomes]
rs774266	0.96[ASN][1000 genomes]
rs813501	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs954051	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26950400-26956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:26950400-26957400	Weak transcription	NHEK	skin
3	chr7:26950400-26957600	Weak transcription	HMEC	breast
4	chr7:26950600-26958000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:26950600-26958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:26952400-26955200	Weak transcription	Fetal Stomach	stomach

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