Variant report

Variant	rs774256
Chromosome Location	chr7:27003454-27003455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10257437	0.82[CEU][hapmap]
rs10257464	0.82[CEU][hapmap]
rs10276952	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11977871	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12667139	0.95[ASN][1000 genomes]
rs12673984	0.80[ASN][1000 genomes]
rs12700771	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12700785	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs13230726	0.81[EUR][1000 genomes]
rs1560621	0.93[ASN][1000 genomes]
rs17426751	0.95[ASN][1000 genomes]
rs17426772	0.95[ASN][1000 genomes]
rs17427218	0.86[ASN][1000 genomes]
rs17436757	0.92[ASN][1000 genomes]
rs17436827	0.89[ASN][1000 genomes]
rs17437154	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17448689	0.94[ASN][1000 genomes]
rs17448911	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17471054	0.94[ASN][1000 genomes]
rs213515	0.88[CEU][hapmap]
rs213516	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213533	0.82[CEU][hapmap]
rs213536	0.82[CEU][hapmap]
rs2259141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2301719	0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap]
rs2465265	0.83[YRI][hapmap]
rs2522822	0.81[YRI][hapmap]
rs2648079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2693660	0.93[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2693661	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2693669	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2936424	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2936425	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs477924	0.82[CEU][hapmap]
rs591895	0.82[CEU][hapmap]
rs62446163	0.95[ASN][1000 genomes]
rs62446164	0.95[ASN][1000 genomes]
rs62448205	0.93[ASN][1000 genomes]
rs62454246	0.91[ASN][1000 genomes]
rs62454250	0.94[ASN][1000 genomes]
rs62457399	0.92[ASN][1000 genomes]
rs62457403	0.92[ASN][1000 genomes]
rs62457404	0.81[ASN][1000 genomes]
rs659131	0.81[CEU][hapmap]
rs6948446	0.82[ASN][1000 genomes]
rs6953314	0.80[ASN][1000 genomes]
rs706015	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs706019	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs774244	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774245	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs774249	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774250	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774251	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774252	0.82[CEU][hapmap]
rs774253	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774263	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs774265	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs774266	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791056	0.82[CEU][hapmap]
rs813501	0.96[ASN][1000 genomes]
rs954051	0.83[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs774256	STK31	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27000000-27003600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:27000000-27004200	Weak transcription	HepG2	liver
3	chr7:27003000-27003600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:27003000-27004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:27003200-27004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:27003200-27004600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:27003400-27003800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links