Variant report

Variant	rs774245
Chromosome Location	chr7:26985815-26985816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10257437	0.82[CEU][hapmap]
rs10257464	0.82[CEU][hapmap]
rs10276952	0.85[EUR][1000 genomes]
rs1082313	0.93[AFR][1000 genomes]
rs11977871	0.94[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs12700771	0.95[EUR][1000 genomes]
rs12700785	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap]
rs13230726	0.82[EUR][1000 genomes]
rs13311400	0.89[AFR][1000 genomes]
rs17437154	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17448911	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs17449024	0.95[CHB][hapmap]
rs2030137	0.84[AFR][1000 genomes]
rs213515	0.88[CEU][hapmap]
rs213516	0.94[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs213527	0.82[LWK][hapmap]
rs213532	0.80[AFR][1000 genomes]
rs213533	0.82[CEU][hapmap]
rs213536	0.82[CEU][hapmap]
rs2252947	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs2259141	0.83[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2301719	0.81[JPT][hapmap]
rs2462901	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs2465263	0.91[YRI][hapmap]
rs2522823	0.82[YRI][hapmap]
rs2522829	0.87[YRI][hapmap]
rs2648079	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2693660	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs2693661	0.94[CEU][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes]
rs2693666	0.83[YRI][hapmap]
rs2693669	0.96[EUR][1000 genomes]
rs2936424	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2936425	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2936426	0.87[AFR][1000 genomes]
rs2960784	0.86[AFR][1000 genomes]
rs2960785	0.84[AFR][1000 genomes]
rs2960786	0.86[AFR][1000 genomes]
rs477924	0.82[CEU][hapmap]
rs591895	0.82[CEU][hapmap]
rs659131	0.81[CEU][hapmap]
rs706015	0.96[EUR][1000 genomes]
rs706019	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs774244	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs774248	0.88[AFR][1000 genomes]
rs774249	0.94[EUR][1000 genomes]
rs774250	0.96[EUR][1000 genomes]
rs774251	0.95[EUR][1000 genomes]
rs774252	0.82[CEU][hapmap]
rs774253	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes]
rs774254	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs774255	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs774256	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs774263	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs774264	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs774265	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs774266	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs774267	0.86[AFR][1000 genomes]
rs774269	0.89[AFR][1000 genomes]
rs7791056	0.82[CEU][hapmap]
rs954051	0.94[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	esv3375882	chr7:26969761-26989047	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs774245	STK31	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26984800-26986200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26984800-26987600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:26985000-26989200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:26985200-26986200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:26985200-26986200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:26985200-26987600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:26985200-26994600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:26985400-26986200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:26985400-26987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:26985400-26987400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:26985600-26986000	Enhancers	H1 Cell Line	embryonic stem cell

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