Variant report

Variant	rs17426932
Chromosome Location	chr7:27035454-27035455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NANOG	chr7:27035335-27035521	H1-hESC	embryonic stem cell:	n/a	chr7:27035453-27035462

Variant related genes	Relation type
SKAP2	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12674308	0.84[AMR][1000 genomes]
rs17426751	0.84[AMR][1000 genomes]
rs17426772	0.84[AMR][1000 genomes]
rs17436236	0.88[EUR][1000 genomes]
rs17436757	0.84[AMR][1000 genomes]
rs17436813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17436827	0.84[AMR][1000 genomes]
rs17437154	1.00[CEU][hapmap]
rs17448689	0.84[AMR][1000 genomes]
rs17448911	1.00[CEU][hapmap]
rs17471054	0.84[AMR][1000 genomes]
rs2301719	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs28357116	0.84[AMR][1000 genomes]
rs62446163	0.84[AMR][1000 genomes]
rs62448201	0.81[AMR][1000 genomes]
rs62454250	0.84[AMR][1000 genomes]
rs62454258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62457399	0.84[AMR][1000 genomes]
rs62457403	0.84[AMR][1000 genomes]
rs62457404	0.84[AMR][1000 genomes]
rs813501	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27034000-27035600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr7:27034000-27035800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr7:27034000-27035800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr7:27034400-27036000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr7:27034600-27037600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:27034800-27035800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:27035000-27036200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:27035200-27035800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr7:27035400-27035600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:27035400-27035600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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