Variant report
| Variant | rs62448202 |
|---|---|
| Chromosome Location | chr7:26912774-26912775 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26902687..26906331-chr7:26911517..26914342,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000005020 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1023711 | 0.91[EUR][1000 genomes] |
| rs11536406 | 0.91[EUR][1000 genomes] |
| rs12055950 | 0.91[EUR][1000 genomes] |
| rs12538196 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12538337 | 0.91[EUR][1000 genomes] |
| rs12672000 | 0.86[EUR][1000 genomes] |
| rs2299100 | 0.91[EUR][1000 genomes] |
| rs2299104 | 0.91[EUR][1000 genomes] |
| rs3735549 | 0.88[EUR][1000 genomes] |
| rs3801817 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3801863 | 0.91[EUR][1000 genomes] |
| rs56746976 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58941309 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62447704 | 0.89[EUR][1000 genomes] |
| rs62447731 | 0.91[EUR][1000 genomes] |
| rs62447733 | 0.89[EUR][1000 genomes] |
| rs62448176 | 0.91[EUR][1000 genomes] |
| rs62448179 | 0.91[EUR][1000 genomes] |
| rs62448195 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs62448201 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62448203 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6461968 | 0.91[EUR][1000 genomes] |
| rs7782107 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9638840 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
