Variant report

Variant	rs73276798
Chromosome Location	chr7:26725155-26725156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26723957..26726724-chr7:27181666..27184631,2	MCF-7	breast:
2	chr7:26724644..26726693-chr7:27189270..27190835,2	MCF-7	breast:
3	chr7:26723927..26726163-chr7:26727475..26729887,2	K562	blood:

Variant related genes	Relation type
ENSG00000254369	Chromatin interaction
ENSG00000106006	Chromatin interaction
ENSG00000106004	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1023711	0.89[AFR][1000 genomes]
rs11536406	0.89[AFR][1000 genomes]
rs12055950	0.89[AFR][1000 genomes]
rs12538337	0.89[AFR][1000 genomes]
rs12672000	0.84[AFR][1000 genomes]
rs2299100	0.89[AFR][1000 genomes]
rs3801863	0.89[AFR][1000 genomes]
rs62447731	0.89[AFR][1000 genomes]
rs641968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6461968	0.80[AFR][1000 genomes]
rs6461969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278893	1.00[AMR][1000 genomes]
rs73280787	1.00[AMR][1000 genomes]
rs9638840	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv5672	chr7:26711462-26757891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:26708800-26725600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:26715000-26731200	Weak transcription	Lung	lung
4	chr7:26715600-26725200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:26715600-26725200	Weak transcription	NHEK	skin
6	chr7:26715600-26725400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:26715600-26726000	Weak transcription	Osteobl	bone
8	chr7:26715600-26726200	Weak transcription	HMEC	breast
9	chr7:26716400-26726000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:26716400-26728200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:26716800-26729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:26720800-26728600	Weak transcription	Spleen	Spleen
13	chr7:26721000-26726000	Weak transcription	Fetal Intestine Large	intestine
14	chr7:26721000-26726200	Weak transcription	Fetal Intestine Small	intestine
15	chr7:26721200-26726000	Weak transcription	HepG2	liver
16	chr7:26722200-26726400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:26722200-26728800	Weak transcription	Small Intestine	intestine
18	chr7:26722600-26728600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:26723000-26725200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:26723000-26728000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:26724200-26728200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:26724400-26725200	Enhancers	Fetal Lung	lung
23	chr7:26724400-26726400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:26724400-26727000	Enhancers	Stomach Smooth Muscle	stomach
25	chr7:26724400-26728000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:26724400-26742000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr7:26724600-26725200	Enhancers	Primary hematopoietic stem cells	blood
28	chr7:26724600-26725600	Strong transcription	Primary B cells from cord blood	blood
29	chr7:26724600-26726200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:26724600-26726200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:26724800-26725600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:26724800-26726600	Enhancers	NHDF-Ad	bronchial
33	chr7:26725000-26725600	Flanking Active TSS	HUVEC	blood vessel
34	chr7:26725000-26726400	Enhancers	Adipose Nuclei	Adipose
35	chr7:26725000-26727200	Enhancers	NHLF	lung
36	chr7:26725000-26728800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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