Variant report

Variant	rs6945204
Chromosome Location	chr7:26842703-26842704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1024452	0.89[EUR][1000 genomes]
rs1024453	0.89[EUR][1000 genomes]
rs1129771	0.87[EUR][1000 genomes]
rs11971041	0.83[EUR][1000 genomes]
rs11971098	0.83[EUR][1000 genomes]
rs11972823	0.92[EUR][1000 genomes]
rs11973332	0.89[EUR][1000 genomes]
rs11976472	0.89[EUR][1000 genomes]
rs11978456	0.89[EUR][1000 genomes]
rs11979611	0.92[EUR][1000 genomes]
rs11982489	0.85[EUR][1000 genomes]
rs57579189	0.85[EUR][1000 genomes]
rs57687803	0.82[EUR][1000 genomes]
rs61609910	0.89[EUR][1000 genomes]
rs6967749	0.85[EUR][1000 genomes]
rs73683491	0.83[EUR][1000 genomes]
rs73683496	0.85[EUR][1000 genomes]
rs73683510	0.92[EUR][1000 genomes]
rs7777645	0.89[EUR][1000 genomes]
rs7780206	0.89[EUR][1000 genomes]
rs7799519	0.83[EUR][1000 genomes]
rs7809419	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv887855	chr7:26823963-26872652	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:26812400-26849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:26813000-26871200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:26821000-26843000	Weak transcription	Fetal Lung	lung
5	chr7:26823000-26846400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:26825400-26872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:26836600-26846200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:26837400-26842800	Weak transcription	Primary B cells from cord blood	blood
9	chr7:26839400-26842800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:26839400-26871800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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