Variant report

Variant	rs73683510
Chromosome Location	chr7:26792481-26792482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10224133	0.83[AFR][1000 genomes]
rs10232697	0.81[AFR][1000 genomes]
rs10232770	0.81[AFR][1000 genomes]
rs10232778	0.81[AFR][1000 genomes]
rs1023712	0.93[AFR][1000 genomes]
rs10241952	0.81[AFR][1000 genomes]
rs1024452	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024453	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276636	0.83[AFR][1000 genomes]
rs10951146	0.93[AFR][1000 genomes]
rs10951147	0.93[AFR][1000 genomes]
rs10951148	0.87[AFR][1000 genomes]
rs1123156	0.87[AFR][1000 genomes]
rs1129771	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773029	0.84[AFR][1000 genomes]
rs11773050	0.83[AFR][1000 genomes]
rs11971041	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971098	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976472	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977233	0.93[AFR][1000 genomes]
rs11978456	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979611	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980739	0.86[AFR][1000 genomes]
rs11982489	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700758	0.84[AFR][1000 genomes]
rs12700760	0.84[AFR][1000 genomes]
rs1468203	0.93[AFR][1000 genomes]
rs1548478	0.83[AFR][1000 genomes]
rs17372780	0.93[AFR][1000 genomes]
rs1859101	0.84[AFR][1000 genomes]
rs2391359	0.84[AFR][1000 genomes]
rs3801853	0.81[AFR][1000 genomes]
rs3801854	0.81[AFR][1000 genomes]
rs3801864	0.84[AFR][1000 genomes]
rs3801866	0.84[AFR][1000 genomes]
rs3801867	0.84[AFR][1000 genomes]
rs55649724	0.93[AFR][1000 genomes]
rs55959127	0.91[AFR][1000 genomes]
rs56374720	0.90[AFR][1000 genomes]
rs57579189	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57687803	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61609910	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461970	0.90[AFR][1000 genomes]
rs6943568	0.84[AFR][1000 genomes]
rs6945204	0.92[EUR][1000 genomes]
rs6967749	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970475	1.00[ASN][1000 genomes]
rs6973237	0.84[AFR][1000 genomes]
rs727449	0.95[AFR][1000 genomes]
rs73061889	0.95[AFR][1000 genomes]
rs73063604	0.91[AFR][1000 genomes]
rs73683491	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683496	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744611	0.81[AFR][1000 genomes]
rs7777316	0.81[AFR][1000 genomes]
rs7777645	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777744	0.81[AFR][1000 genomes]
rs7780206	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782621	0.95[AFR][1000 genomes]
rs7799519	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803699	0.90[AFR][1000 genomes]
rs7809419	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891875	0.81[AFR][1000 genomes]
rs891876	0.81[AFR][1000 genomes]
rs9648019	0.95[AFR][1000 genomes]
rs9648331	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26776200-26800000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:26779800-26798600	Weak transcription	Primary B cells from cord blood	blood
5	chr7:26779800-26809000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:26780800-26797400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:26791600-26792600	Enhancers	HepG2	liver

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