Variant report
Variant | rs6461970 |
---|---|
Chromosome Location | chr7:26813891-26813892 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10215738 | 0.90[ASN][1000 genomes] |
rs10224133 | 0.82[AFR][1000 genomes] |
rs10225700 | 0.85[ASN][1000 genomes] |
rs10225924 | 0.93[ASN][1000 genomes] |
rs10227231 | 0.86[ASN][1000 genomes] |
rs10227529 | 0.86[ASN][1000 genomes] |
rs10227673 | 0.86[ASN][1000 genomes] |
rs10227898 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10229837 | 0.93[ASN][1000 genomes] |
rs10232697 | 0.88[AFR][1000 genomes] |
rs10232770 | 0.89[AFR][1000 genomes] |
rs10232778 | 0.89[AFR][1000 genomes] |
rs10236221 | 0.86[ASN][1000 genomes] |
rs1023712 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10241952 | 0.88[AFR][1000 genomes] |
rs10242572 | 0.86[ASN][1000 genomes] |
rs10244986 | 0.93[ASN][1000 genomes] |
rs10248500 | 0.86[ASN][1000 genomes] |
rs10251839 | 0.86[ASN][1000 genomes] |
rs10256250 | 0.86[ASN][1000 genomes] |
rs10262414 | 0.93[ASN][1000 genomes] |
rs10267950 | 0.93[ASN][1000 genomes] |
rs10270187 | 0.86[ASN][1000 genomes] |
rs10272190 | 0.86[ASN][1000 genomes] |
rs10272301 | 0.93[ASN][1000 genomes] |
rs10272303 | 0.93[ASN][1000 genomes] |
rs10272457 | 0.86[ASN][1000 genomes] |
rs10272603 | 0.86[ASN][1000 genomes] |
rs10275896 | 0.93[ASN][1000 genomes] |
rs10276471 | 0.93[ASN][1000 genomes] |
rs10276636 | 0.86[AFR][1000 genomes] |
rs1030648 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10486478 | 0.91[ASN][1000 genomes] |
rs10486483 | 0.86[ASN][1000 genomes] |
rs10486485 | 0.85[ASN][1000 genomes] |
rs10951146 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10951147 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10951148 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10951149 | 0.89[AFR][1000 genomes] |
rs1123156 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1123157 | 0.86[AFR][1000 genomes] |
rs1123158 | 0.86[AFR][1000 genomes] |
rs11773029 | 0.84[AFR][1000 genomes] |
rs11773050 | 0.83[AFR][1000 genomes] |
rs11973332 | 0.87[AFR][1000 genomes] |
rs11977233 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11980739 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12333525 | 0.93[ASN][1000 genomes] |
rs12532199 | 0.93[ASN][1000 genomes] |
rs12532395 | 0.93[ASN][1000 genomes] |
rs12532796 | 0.93[ASN][1000 genomes] |
rs12534899 | 0.86[ASN][1000 genomes] |
rs12534921 | 0.86[ASN][1000 genomes] |
rs12535784 | 0.86[ASN][1000 genomes] |
rs12536145 | 0.86[ASN][1000 genomes] |
rs12536560 | 0.93[ASN][1000 genomes] |
rs12537014 | 0.88[ASN][1000 genomes] |
rs12537323 | 0.93[ASN][1000 genomes] |
rs12539719 | 0.93[ASN][1000 genomes] |
rs12540045 | 0.86[ASN][1000 genomes] |
rs12540388 | 0.85[ASN][1000 genomes] |
rs12540508 | 0.86[ASN][1000 genomes] |
rs12700758 | 0.84[AFR][1000 genomes] |
rs12700760 | 0.84[AFR][1000 genomes] |
rs13229947 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1327988 | 0.93[ASN][1000 genomes] |
rs1327989 | 0.93[ASN][1000 genomes] |
rs13438513 | 0.90[ASN][1000 genomes] |
rs13438514 | 0.86[ASN][1000 genomes] |
rs1468203 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1548478 | 0.82[AFR][1000 genomes] |
rs1548481 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17315334 | 0.93[ASN][1000 genomes] |
rs17315775 | 0.93[ASN][1000 genomes] |
rs17315929 | 0.86[ASN][1000 genomes] |
rs17323934 | 0.85[ASN][1000 genomes] |
rs17372780 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17375272 | 0.86[ASN][1000 genomes] |
rs17376018 | 0.86[ASN][1000 genomes] |
rs1859101 | 0.84[AFR][1000 genomes] |
rs1967332 | 0.86[ASN][1000 genomes] |
rs1982995 | 0.86[ASN][1000 genomes] |
rs2015649 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2030136 | 0.85[ASN][1000 genomes] |
rs2031811 | 0.86[ASN][1000 genomes] |
rs2189016 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2189017 | 0.86[ASN][1000 genomes] |
rs2189019 | 0.86[ASN][1000 genomes] |
rs2391359 | 0.84[AFR][1000 genomes] |
rs2391360 | 0.89[AFR][1000 genomes] |
rs2391362 | 0.85[ASN][1000 genomes] |
rs2769363 | 0.81[ASN][1000 genomes] |
rs28404962 | 0.93[ASN][1000 genomes] |
rs28550029 | 0.86[ASN][1000 genomes] |
rs28617235 | 0.93[ASN][1000 genomes] |
rs28733208 | 0.93[ASN][1000 genomes] |
rs28806787 | 0.93[ASN][1000 genomes] |
rs28816386 | 0.86[ASN][1000 genomes] |
rs28883078 | 0.86[ASN][1000 genomes] |
rs3213853 | 0.86[ASN][1000 genomes] |
rs3801803 | 0.85[ASN][1000 genomes] |
rs3801805 | 0.86[ASN][1000 genomes] |
rs3801807 | 0.86[ASN][1000 genomes] |
rs3801808 | 0.86[ASN][1000 genomes] |
rs3801809 | 0.86[ASN][1000 genomes] |
rs3801810 | 0.83[ASN][1000 genomes] |
rs3801812 | 0.86[ASN][1000 genomes] |
rs3801813 | 0.86[ASN][1000 genomes] |
rs3801814 | 0.86[ASN][1000 genomes] |
rs3801815 | 0.86[ASN][1000 genomes] |
rs3801816 | 0.85[ASN][1000 genomes] |
rs3801819 | 0.86[ASN][1000 genomes] |
rs3801820 | 0.85[ASN][1000 genomes] |
rs3801821 | 0.85[ASN][1000 genomes] |
rs3801822 | 0.85[ASN][1000 genomes] |
rs3801823 | 0.85[ASN][1000 genomes] |
rs3801825 | 0.93[ASN][1000 genomes] |
rs3801826 | 0.93[ASN][1000 genomes] |
rs3801827 | 0.93[ASN][1000 genomes] |
rs3801828 | 0.93[ASN][1000 genomes] |
rs3801829 | 0.93[ASN][1000 genomes] |
rs3801830 | 0.93[ASN][1000 genomes] |
rs3801831 | 0.93[ASN][1000 genomes] |
rs3801832 | 0.91[ASN][1000 genomes] |
rs3801833 | 0.90[ASN][1000 genomes] |
rs3801834 | 0.90[ASN][1000 genomes] |
rs3801836 | 0.91[ASN][1000 genomes] |
rs3801837 | 0.91[ASN][1000 genomes] |
rs3801840 | 0.93[ASN][1000 genomes] |
rs3801842 | 0.93[ASN][1000 genomes] |
rs3801843 | 0.93[ASN][1000 genomes] |
rs3801844 | 0.93[ASN][1000 genomes] |
rs3801850 | 0.93[ASN][1000 genomes] |
rs3801853 | 0.88[AFR][1000 genomes] |
rs3801854 | 0.88[AFR][1000 genomes] |
rs3801855 | 0.89[AFR][1000 genomes] |
rs3801864 | 0.84[AFR][1000 genomes] |
rs3801866 | 0.84[AFR][1000 genomes] |
rs3801867 | 0.84[AFR][1000 genomes] |
rs3823928 | 0.86[ASN][1000 genomes] |
rs3823929 | 0.93[ASN][1000 genomes] |
rs3823930 | 0.93[ASN][1000 genomes] |
rs3823931 | 0.93[ASN][1000 genomes] |
rs3823932 | 0.93[ASN][1000 genomes] |
rs3823933 | 0.93[ASN][1000 genomes] |
rs3823934 | 0.93[ASN][1000 genomes] |
rs3823936 | 0.93[ASN][1000 genomes] |
rs3823938 | 0.93[ASN][1000 genomes] |
rs3934268 | 0.86[ASN][1000 genomes] |
rs4345466 | 0.88[AFR][1000 genomes] |
rs4512299 | 0.89[AFR][1000 genomes] |
rs4719882 | 0.86[ASN][1000 genomes] |
rs4722641 | 0.93[ASN][1000 genomes] |
rs4722643 | 0.93[ASN][1000 genomes] |
rs4722644 | 0.93[ASN][1000 genomes] |
rs4722647 | 0.86[ASN][1000 genomes] |
rs55649724 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55739485 | 0.85[ASN][1000 genomes] |
rs55959127 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56154570 | 0.86[ASN][1000 genomes] |
rs56374720 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs57135974 | 0.93[ASN][1000 genomes] |
rs57623217 | 0.86[ASN][1000 genomes] |
rs58760954 | 0.93[ASN][1000 genomes] |
rs59254259 | 0.86[ASN][1000 genomes] |
rs61354389 | 0.86[ASN][1000 genomes] |
rs61609910 | 0.87[AFR][1000 genomes] |
rs6461979 | 0.86[ASN][1000 genomes] |
rs6461980 | 0.86[ASN][1000 genomes] |
rs6943568 | 0.84[AFR][1000 genomes] |
rs6948584 | 0.93[ASN][1000 genomes] |
rs6948657 | 0.93[ASN][1000 genomes] |
rs6956088 | 0.93[ASN][1000 genomes] |
rs6964094 | 0.93[ASN][1000 genomes] |
rs6971397 | 0.83[ASN][1000 genomes] |
rs6973237 | 0.84[AFR][1000 genomes] |
rs6978504 | 0.91[EUR][1000 genomes] |
rs727449 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs727450 | 0.83[ASN][1000 genomes] |
rs73061889 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73061894 | 0.86[ASN][1000 genomes] |
rs73063604 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73065504 | 0.93[ASN][1000 genomes] |
rs73065517 | 0.93[ASN][1000 genomes] |
rs73065521 | 0.93[ASN][1000 genomes] |
rs73067435 | 0.93[ASN][1000 genomes] |
rs73067437 | 0.93[ASN][1000 genomes] |
rs73067443 | 0.91[ASN][1000 genomes] |
rs73067456 | 0.93[ASN][1000 genomes] |
rs73067472 | 0.93[ASN][1000 genomes] |
rs73067475 | 0.93[ASN][1000 genomes] |
rs73067476 | 0.93[ASN][1000 genomes] |
rs73067479 | 0.93[ASN][1000 genomes] |
rs73069507 | 0.86[ASN][1000 genomes] |
rs73069510 | 0.86[ASN][1000 genomes] |
rs73069533 | 0.86[ASN][1000 genomes] |
rs73069539 | 0.81[ASN][1000 genomes] |
rs73069540 | 0.85[ASN][1000 genomes] |
rs73069541 | 0.85[ASN][1000 genomes] |
rs73683510 | 0.90[AFR][1000 genomes] |
rs744611 | 0.88[AFR][1000 genomes] |
rs744612 | 0.89[AFR][1000 genomes] |
rs7457076 | 0.83[ASN][1000 genomes] |
rs763616 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7777316 | 0.88[AFR][1000 genomes] |
rs7777744 | 0.88[AFR][1000 genomes] |
rs7782621 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7785689 | 0.85[ASN][1000 genomes] |
rs7785711 | 0.85[ASN][1000 genomes] |
rs7785798 | 0.85[ASN][1000 genomes] |
rs7785815 | 0.81[ASN][1000 genomes] |
rs7785832 | 0.93[ASN][1000 genomes] |
rs7785918 | 0.85[ASN][1000 genomes] |
rs7791513 | 0.86[ASN][1000 genomes] |
rs7793663 | 0.89[AFR][1000 genomes] |
rs7795074 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7802688 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7802715 | 0.85[ASN][1000 genomes] |
rs7803699 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7804356 | 0.86[ASN][1000 genomes] |
rs7804620 | 0.86[ASN][1000 genomes] |
rs7805766 | 0.86[ASN][1000 genomes] |
rs891875 | 0.88[AFR][1000 genomes] |
rs891876 | 0.88[AFR][1000 genomes] |
rs9648019 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9648021 | 0.84[AFR][1000 genomes] |
rs9648331 | 0.88[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:26806600-26829400 | Weak transcription | Adipose Nuclei | Adipose |
2 | chr7:26807800-26825400 | Weak transcription | Lung | lung |
3 | chr7:26808000-26825200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
4 | chr7:26808000-26854800 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
5 | chr7:26809000-26814600 | Strong transcription | Primary B cells from peripheral blood | blood |
6 | chr7:26809000-26815000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
7 | chr7:26809400-26816600 | Strong transcription | Primary B cells from cord blood | blood |
8 | chr7:26809600-26824600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
9 | chr7:26810200-26814800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
10 | chr7:26810400-26829000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
11 | chr7:26810600-26814200 | Strong transcription | Primary monocytes fromperipheralblood | blood |
12 | chr7:26810600-26835200 | Weak transcription | Spleen | Spleen |
13 | chr7:26812200-26820400 | Weak transcription | Fetal Lung | lung |
14 | chr7:26812400-26819000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
15 | chr7:26812400-26822200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
16 | chr7:26812400-26849000 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
17 | chr7:26812800-26822000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
18 | chr7:26812800-26822200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
19 | chr7:26812800-26841600 | Weak transcription | Primary hematopoietic stem cells | blood |
20 | chr7:26813000-26814600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
21 | chr7:26813000-26834000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
22 | chr7:26813000-26871200 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
23 | chr7:26813600-26815000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |