Variant report

Variant	rs763616
Chromosome Location	chr7:26784600-26784601
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 267 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:264)

rs_ID	r²[population]
rs10085721	1.00[CHB][hapmap]
rs10215738	0.80[ASN][1000 genomes]
rs10225700	0.81[ASN][1000 genomes]
rs10225924	0.83[ASN][1000 genomes]
rs10227140	1.00[CHB][hapmap]
rs10227231	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10227529	0.83[ASN][1000 genomes]
rs10227673	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10227898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10229837	0.83[ASN][1000 genomes]
rs10231161	1.00[CHB][hapmap]
rs10236221	0.83[ASN][1000 genomes]
rs1023712	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10239608	1.00[CHB][hapmap]
rs10242572	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1024453	0.83[AFR][1000 genomes]
rs10244986	0.83[ASN][1000 genomes]
rs10248500	0.83[ASN][1000 genomes]
rs10251839	0.83[ASN][1000 genomes]
rs10256250	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10256561	1.00[CHB][hapmap]
rs10256799	0.88[CHB][hapmap]
rs10261915	1.00[CHB][hapmap]
rs10262414	0.83[ASN][1000 genomes]
rs10267950	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10269731	1.00[CHB][hapmap]
rs10270187	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10272190	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10272301	0.83[ASN][1000 genomes]
rs10272303	0.83[ASN][1000 genomes]
rs10272457	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10272603	0.83[ASN][1000 genomes]
rs10273468	1.00[CHB][hapmap]
rs10275896	0.83[ASN][1000 genomes]
rs10276471	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10281261	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1030648	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10486478	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10486483	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10486485	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10951145	1.00[CHB][hapmap]
rs10951146	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951147	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951148	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10951149	1.00[CHB][hapmap]
rs1123156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1123157	1.00[CHB][hapmap]
rs1123158	1.00[CHB][hapmap]
rs11770043	1.00[CHB][hapmap]
rs11772673	1.00[CHB][hapmap]
rs11773029	1.00[CHB][hapmap]
rs11973332	0.94[YRI][hapmap]
rs11977233	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11980739	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12333525	0.83[ASN][1000 genomes]
rs12532199	0.83[ASN][1000 genomes]
rs12532395	0.83[ASN][1000 genomes]
rs12532796	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12534899	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12534921	0.83[ASN][1000 genomes]
rs12535784	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12536145	0.83[ASN][1000 genomes]
rs12536560	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12537323	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12539719	0.83[ASN][1000 genomes]
rs12540045	0.83[ASN][1000 genomes]
rs12540388	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12540508	0.83[ASN][1000 genomes]
rs12700755	1.00[CHB][hapmap]
rs12700759	1.00[CHB][hapmap]
rs12700761	1.00[CHB][hapmap]
rs13186	1.00[CHB][hapmap]
rs13229947	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13234201	1.00[CHB][hapmap]
rs13234336	1.00[CHB][hapmap]
rs1327988	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1327989	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13438513	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13438514	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1468203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548478	1.00[CHB][hapmap]
rs1548479	1.00[CHB][hapmap]
rs1548481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17315334	0.83[ASN][1000 genomes]
rs17315775	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17315929	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17323934	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17372780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17375272	0.83[ASN][1000 genomes]
rs17376018	0.83[ASN][1000 genomes]
rs1859101	1.00[CHB][hapmap]
rs1967332	0.83[ASN][1000 genomes]
rs1982995	0.83[ASN][1000 genomes]
rs2015649	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2023819	1.00[CHB][hapmap]
rs2030136	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2031811	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2082365	1.00[CHB][hapmap]
rs2106905	1.00[CHB][hapmap]
rs212838	0.85[ASN][1000 genomes]
rs212842	1.00[CHB][hapmap]
rs212844	1.00[CHB][hapmap]
rs212846	1.00[CHB][hapmap]
rs212847	1.00[CHB][hapmap]
rs212848	0.90[ASN][1000 genomes]
rs212850	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs212852	1.00[CHB][hapmap]
rs212853	1.00[CHB][hapmap]
rs212856	0.90[ASN][1000 genomes]
rs212857	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs212858	1.00[CHB][hapmap]
rs2189016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189017	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2189019	1.00[CHB][hapmap]
rs2237328	1.00[CHB][hapmap]
rs2282906	1.00[CHB][hapmap]
rs2299102	1.00[CHB][hapmap]
rs2391360	1.00[CHB][hapmap]
rs2391362	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2693665	0.88[CHB][hapmap]
rs2712242	1.00[CHB][hapmap]
rs28404962	0.83[ASN][1000 genomes]
rs28550029	0.83[ASN][1000 genomes]
rs28617235	0.83[ASN][1000 genomes]
rs28733208	0.83[ASN][1000 genomes]
rs28806787	0.83[ASN][1000 genomes]
rs28816386	0.83[ASN][1000 genomes]
rs28883078	0.83[ASN][1000 genomes]
rs3213853	0.83[ASN][1000 genomes]
rs3757654	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3801803	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs3801805	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801807	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801808	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801809	0.83[ASN][1000 genomes]
rs3801810	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs3801812	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801813	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801814	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801815	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801816	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs3801819	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801820	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3801821	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3801822	0.81[ASN][1000 genomes]
rs3801823	0.81[ASN][1000 genomes]
rs3801825	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801826	0.83[ASN][1000 genomes]
rs3801827	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801828	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801829	0.83[ASN][1000 genomes]
rs3801830	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801831	0.83[ASN][1000 genomes]
rs3801832	0.82[ASN][1000 genomes]
rs3801836	0.82[ASN][1000 genomes]
rs3801837	0.82[ASN][1000 genomes]
rs3801840	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801842	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801843	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801844	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801846	0.88[CHB][hapmap]
rs3801848	1.00[CHB][hapmap]
rs3801850	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3801853	1.00[CHB][hapmap]
rs3801857	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap]
rs3801860	1.00[CHB][hapmap]
rs3801864	1.00[CHB][hapmap]
rs3823928	0.83[ASN][1000 genomes]
rs3823929	0.83[ASN][1000 genomes]
rs3823930	0.83[ASN][1000 genomes]
rs3823931	0.83[ASN][1000 genomes]
rs3823932	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3823933	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3823934	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3823936	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3823938	0.83[ASN][1000 genomes]
rs3934268	0.83[ASN][1000 genomes]
rs4719877	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4719882	0.83[ASN][1000 genomes]
rs4722630	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4722631	1.00[CHB][hapmap]
rs4722641	0.83[ASN][1000 genomes]
rs4722643	0.83[ASN][1000 genomes]
rs4722644	0.83[ASN][1000 genomes]
rs4722647	0.83[ASN][1000 genomes]
rs5012512	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs55649724	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55739485	0.81[ASN][1000 genomes]
rs55959127	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56154570	0.83[ASN][1000 genomes]
rs56374720	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57135974	0.83[ASN][1000 genomes]
rs57623217	0.83[ASN][1000 genomes]
rs58760954	0.83[ASN][1000 genomes]
rs59254259	0.83[ASN][1000 genomes]
rs61354389	0.83[ASN][1000 genomes]
rs6461961	1.00[CHB][hapmap]
rs6461962	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6461963	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6461964	1.00[CHB][hapmap]
rs6461965	1.00[CHB][hapmap]
rs6461970	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6461971	1.00[CHB][hapmap]
rs6461979	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6461980	0.83[ASN][1000 genomes]
rs6948584	0.83[ASN][1000 genomes]
rs6948657	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6951065	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6956088	0.83[ASN][1000 genomes]
rs6964094	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6964817	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6967749	0.82[YRI][hapmap]
rs6970591	1.00[CHB][hapmap]
rs6971397	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6972378	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6973237	1.00[CHB][hapmap]
rs6975813	0.88[YRI][hapmap]
rs6978504	0.95[EUR][1000 genomes]
rs727449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727450	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs73061889	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73063604	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73065504	0.83[ASN][1000 genomes]
rs73065517	0.83[ASN][1000 genomes]
rs73065521	0.83[ASN][1000 genomes]
rs73067435	0.83[ASN][1000 genomes]
rs73067437	0.83[ASN][1000 genomes]
rs73067443	0.82[ASN][1000 genomes]
rs73067456	0.83[ASN][1000 genomes]
rs73067472	0.83[ASN][1000 genomes]
rs73067475	0.83[ASN][1000 genomes]
rs73067476	0.83[ASN][1000 genomes]
rs73067479	0.83[ASN][1000 genomes]
rs73069507	0.83[ASN][1000 genomes]
rs73069510	0.83[ASN][1000 genomes]
rs73069533	0.83[ASN][1000 genomes]
rs73069539	0.81[ASN][1000 genomes]
rs73069540	0.82[ASN][1000 genomes]
rs73069541	0.82[ASN][1000 genomes]
rs7457076	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7777645	0.82[AFR][1000 genomes]
rs7780206	0.84[YRI][hapmap];0.90[AFR][1000 genomes]
rs7782621	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7785689	0.81[ASN][1000 genomes]
rs7785711	0.81[ASN][1000 genomes]
rs7785798	0.81[ASN][1000 genomes]
rs7785832	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7785918	0.81[ASN][1000 genomes]
rs7791513	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7795074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799888	1.00[CHB][hapmap]
rs7802688	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7803699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7804356	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7804620	0.83[ASN][1000 genomes]
rs7805766	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7807640	1.00[CHB][hapmap]
rs7809419	0.83[YRI][hapmap]
rs7810109	1.00[CHB][hapmap]
rs7810127	1.00[CHB][hapmap]
rs891876	1.00[CHB][hapmap]
rs9648019	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9648020	1.00[CHB][hapmap]
rs989250	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018125	chr7:26745074-26789814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs763616	SKAP2	cis	Whole Blood	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26776200-26800000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:26779200-26787200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:26779800-26798600	Weak transcription	Primary B cells from cord blood	blood
6	chr7:26779800-26809000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:26780800-26797400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood

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