Variant report

Variant	rs212853
Chromosome Location	chr7:26726320-26726321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26723957..26726724-chr7:27181666..27184631,2	MCF-7	breast:
2	chr7:26725724..26726744-chr7:27200278..27201244,5	K562	blood:
3	chr7:26725771..26726610-chr7:27176008..27176865,3	MCF-7	breast:
4	chr7:26725689..26726610-chr7:27200641..27201297,2	MCF-7	breast:
5	chr7:26724644..26726693-chr7:27189270..27190835,2	MCF-7	breast:
6	chr7:26726087..26726590-chr7:27183098..27183663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106006	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000254369	Chromatin interaction

Extended variants
information (count: 256 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:249)

rs_ID	r²[population]
rs10085721	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10224133	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10227140	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10227231	1.00[CHB][hapmap]
rs10227673	1.00[CHB][hapmap]
rs10227898	0.94[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs10228105	0.84[ASW][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10231161	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10232697	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10232770	0.92[EUR][1000 genomes]
rs10232778	0.93[EUR][1000 genomes]
rs10237921	0.84[ASN][1000 genomes]
rs10238253	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10239608	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10241952	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10242572	1.00[CHB][hapmap]
rs1024454	0.82[CEU][hapmap]
rs10245162	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245367	0.84[ASN][1000 genomes]
rs10246641	0.84[ASN][1000 genomes]
rs10247509	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249824	0.82[ASN][1000 genomes]
rs10250223	0.86[ASN][1000 genomes]
rs10255249	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10256250	1.00[CHB][hapmap]
rs10256561	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10256799	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10261915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10263118	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10267950	1.00[CHB][hapmap]
rs10269731	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10270187	1.00[CHB][hapmap]
rs10272190	1.00[CHB][hapmap]
rs10272457	1.00[CHB][hapmap]
rs10273468	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10276471	1.00[CHB][hapmap]
rs10276636	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10281261	1.00[CHB][hapmap]
rs1030644	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486478	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs10486483	1.00[CHB][hapmap]
rs10486485	1.00[CHB][hapmap]
rs10807834	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951145	0.96[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10951149	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1123156	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1123157	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1123158	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11764558	0.82[CEU][hapmap]
rs11770043	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11770344	0.81[CEU][hapmap]
rs11772673	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11773029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11773050	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532339	0.84[ASN][1000 genomes]
rs12532796	1.00[CHB][hapmap]
rs12534899	1.00[CHB][hapmap]
rs12535078	0.84[ASN][1000 genomes]
rs12535784	1.00[CHB][hapmap]
rs12536560	1.00[CHB][hapmap]
rs12537323	1.00[CHB][hapmap]
rs12540388	1.00[CHB][hapmap]
rs12668948	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700754	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs12700755	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700757	0.82[CEU][hapmap]
rs12700758	0.92[CEU][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12700759	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700760	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700761	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700762	0.82[CEU][hapmap]
rs13186	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13229947	1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs13234201	0.89[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs13234336	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1327988	1.00[CHB][hapmap]
rs1327989	1.00[CHB][hapmap]
rs13438513	1.00[CHB][hapmap]
rs13438514	1.00[CHB][hapmap]
rs1468203	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1548022	0.82[CEU][hapmap]
rs1548478	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548479	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548481	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17315775	1.00[CHB][hapmap]
rs17315929	1.00[CHB][hapmap]
rs17323934	1.00[CHB][hapmap]
rs17372780	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs1859101	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2015543	0.89[ASN][1000 genomes]
rs2017794	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2023819	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2023821	0.81[EUR][1000 genomes]
rs2030136	1.00[CHB][hapmap]
rs2031811	1.00[CHB][hapmap]
rs2082365	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs2106905	1.00[CHB][hapmap]
rs212840	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs212842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212844	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212845	0.82[EUR][1000 genomes]
rs212846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212847	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212849	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212850	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212851	0.85[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs212852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs212854	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs212855	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212857	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212858	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2189016	1.00[CHB][hapmap]
rs2189017	1.00[CHB][hapmap]
rs2189019	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs2237328	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282906	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299101	0.80[EUR][1000 genomes]
rs2299102	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391359	0.96[CEU][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391360	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391362	1.00[CHB][hapmap]
rs2769365	0.91[JPT][hapmap]
rs28403911	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3757654	1.00[CHB][hapmap]
rs3801803	1.00[CHB][hapmap]
rs3801805	1.00[CHB][hapmap]
rs3801806	0.91[JPT][hapmap];0.80[TSI][hapmap]
rs3801807	1.00[CHB][hapmap]
rs3801808	1.00[CHB][hapmap]
rs3801810	1.00[CHB][hapmap]
rs3801812	1.00[CHB][hapmap]
rs3801813	1.00[CHB][hapmap]
rs3801814	1.00[CHB][hapmap]
rs3801815	1.00[CHB][hapmap]
rs3801816	1.00[CHB][hapmap]
rs3801819	1.00[CHB][hapmap]
rs3801820	1.00[CHB][hapmap]
rs3801821	1.00[CHB][hapmap]
rs3801825	1.00[CHB][hapmap]
rs3801827	1.00[CHB][hapmap]
rs3801828	1.00[CHB][hapmap]
rs3801830	1.00[CHB][hapmap]
rs3801840	1.00[CHB][hapmap]
rs3801842	1.00[CHB][hapmap]
rs3801843	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs3801844	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs3801846	0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3801847	0.86[ASN][1000 genomes]
rs3801848	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3801850	1.00[CHB][hapmap]
rs3801853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801854	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801855	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801857	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3801860	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801864	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801866	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3801867	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3801868	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801872	0.82[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs3823932	1.00[CHB][hapmap]
rs3823933	1.00[CHB][hapmap]
rs3823934	1.00[CHB][hapmap]
rs3823936	1.00[CHB][hapmap]
rs3823939	0.86[ASN][1000 genomes]
rs4345466	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4512299	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4573150	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4719877	1.00[CHB][hapmap]
rs4719879	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4722628	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4722630	1.00[CHB][hapmap]
rs4722631	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4722633	0.89[ASN][1000 genomes]
rs4722634	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5012512	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs503110	0.91[JPT][hapmap]
rs55836768	0.84[ASN][1000 genomes]
rs55904994	0.84[ASN][1000 genomes]
rs56359409	0.84[ASN][1000 genomes]
rs570840	0.90[JPT][hapmap]
rs58988613	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607099	0.91[JPT][hapmap];0.80[TSI][hapmap]
rs6461961	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461962	1.00[CHB][hapmap]
rs6461963	1.00[CHB][hapmap]
rs6461964	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6461965	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6461971	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461973	0.84[ASN][1000 genomes]
rs6461974	0.80[ASN][1000 genomes]
rs6461975	0.83[ASN][1000 genomes]
rs6461979	1.00[CHB][hapmap]
rs667841	0.91[JPT][hapmap]
rs6943568	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6943623	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6944529	0.84[ASN][1000 genomes]
rs6948657	1.00[CHB][hapmap]
rs6951065	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6964094	1.00[CHB][hapmap]
rs6964817	1.00[CHB][hapmap]
rs6965167	0.84[ASN][1000 genomes]
rs6970591	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6971397	1.00[CHB][hapmap]
rs6972378	1.00[CHB][hapmap]
rs6973237	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6978504	0.86[ASN][1000 genomes]
rs727449	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs727450	1.00[CHB][hapmap]
rs73065526	0.84[ASN][1000 genomes]
rs744611	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs744612	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7457076	1.00[CHB][hapmap]
rs763616	1.00[CHB][hapmap]
rs7777316	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777744	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7779604	0.84[ASN][1000 genomes]
rs7779843	0.84[ASN][1000 genomes]
rs7784206	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7784548	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7785832	1.00[CHB][hapmap]
rs7788165	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791513	1.00[CHB][hapmap]
rs7793663	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7794399	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7795074	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7795313	0.82[CEU][hapmap];0.89[TSI][hapmap]
rs7798696	0.84[ASN][1000 genomes]
rs7799888	1.00[CHB][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7802771	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7802852	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803699	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7804356	1.00[CHB][hapmap]
rs7805766	1.00[CHB][hapmap]
rs7807640	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7810109	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7810127	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7811764	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891874	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs891875	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs891876	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs934410	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9648018	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9648020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9648021	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9648330	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9648331	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9770851	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs989250	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv5672	chr7:26711462-26757891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs212853	EVX1	cis	parietal	SCAN
rs212853	SKAP2	cis	Whole Blood	GTEx
rs212853	SKAP2	cis	cerebellum	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:26715000-26731200	Weak transcription	Lung	lung
3	chr7:26716400-26728200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26716800-26729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:26720800-26728600	Weak transcription	Spleen	Spleen
6	chr7:26722200-26726400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:26722200-26728800	Weak transcription	Small Intestine	intestine
8	chr7:26722600-26728600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:26723000-26728000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:26724200-26728200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:26724400-26726400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:26724400-26727000	Enhancers	Stomach Smooth Muscle	stomach
13	chr7:26724400-26728000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:26724400-26742000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:26724800-26726600	Enhancers	NHDF-Ad	bronchial
16	chr7:26725000-26726400	Enhancers	Adipose Nuclei	Adipose
17	chr7:26725000-26727200	Enhancers	NHLF	lung
18	chr7:26725000-26728800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:26725200-26726600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:26725200-26726600	Enhancers	NHEK	skin
21	chr7:26725200-26727000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:26725200-26727000	Enhancers	Fetal Stomach	stomach
23	chr7:26725400-26726400	Enhancers	Fetal Lung	lung
24	chr7:26725400-26726400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:26725400-26726400	Weak transcription	A549	lung
26	chr7:26725400-26727000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:26725400-26728600	Weak transcription	Colonic Mucosa	Colon
28	chr7:26725600-26726600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:26725600-26726800	Weak transcription	GM12878-XiMat	blood
30	chr7:26725600-26727000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:26725600-26727000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:26725600-26728000	Weak transcription	Primary B cells from cord blood	blood
33	chr7:26725600-26728200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:26725600-26728600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:26725600-26732200	Enhancers	Primary hematopoietic stem cells	blood
36	chr7:26725600-26732400	Enhancers	HUVEC	blood vessel
37	chr7:26725800-26726600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:26726000-26726600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:26726000-26726600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:26726000-26726800	Enhancers	Osteobl	bone
41	chr7:26726000-26727000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr7:26726000-26727000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:26726000-26727000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr7:26726000-26730400	Enhancers	Fetal Intestine Large	intestine
45	chr7:26726000-26730600	Enhancers	HepG2	liver
46	chr7:26726200-26726400	Enhancers	Hela-S3	cervix
47	chr7:26726200-26726600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr7:26726200-26726600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
49	chr7:26726200-26726600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:26726200-26726600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links