Variant report
Variant | rs10246641 |
---|---|
Chromosome Location | chr7:26837746-26837747 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085721 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10224133 | 0.90[ASN][1000 genomes] |
rs10227140 | 0.87[ASN][1000 genomes] |
rs10231161 | 0.82[ASN][1000 genomes] |
rs10232697 | 0.87[ASN][1000 genomes] |
rs10237921 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10238253 | 0.93[ASN][1000 genomes] |
rs10239608 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10241952 | 0.93[ASN][1000 genomes] |
rs10245162 | 0.93[ASN][1000 genomes] |
rs10245367 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10247509 | 0.87[ASN][1000 genomes] |
rs10249824 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10250223 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10255249 | 0.90[ASN][1000 genomes] |
rs10256561 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10256799 | 0.93[ASN][1000 genomes] |
rs10261915 | 0.93[ASN][1000 genomes] |
rs10263118 | 0.87[ASN][1000 genomes] |
rs10269731 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10273468 | 0.87[ASN][1000 genomes] |
rs10276636 | 0.87[ASN][1000 genomes] |
rs1030644 | 0.87[ASN][1000 genomes] |
rs10807834 | 0.86[ASN][1000 genomes] |
rs10951145 | 0.87[ASN][1000 genomes] |
rs10951149 | 0.93[ASN][1000 genomes] |
rs1123157 | 0.93[ASN][1000 genomes] |
rs1123158 | 0.93[ASN][1000 genomes] |
rs11770043 | 0.87[ASN][1000 genomes] |
rs11772673 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11773029 | 0.90[ASN][1000 genomes] |
rs11773050 | 0.90[ASN][1000 genomes] |
rs12532339 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12535078 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12668948 | 0.84[ASN][1000 genomes] |
rs12700755 | 0.84[ASN][1000 genomes] |
rs12700758 | 0.87[ASN][1000 genomes] |
rs12700759 | 0.90[ASN][1000 genomes] |
rs12700760 | 0.90[ASN][1000 genomes] |
rs12700761 | 0.90[ASN][1000 genomes] |
rs13186 | 0.80[ASN][1000 genomes] |
rs13234201 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs13234336 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1548478 | 0.87[ASN][1000 genomes] |
rs1548479 | 0.87[ASN][1000 genomes] |
rs1859101 | 0.89[ASN][1000 genomes] |
rs2015543 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2017794 | 0.87[ASN][1000 genomes] |
rs2023819 | 0.87[ASN][1000 genomes] |
rs212842 | 0.82[ASN][1000 genomes] |
rs212844 | 0.82[ASN][1000 genomes] |
rs212846 | 0.84[ASN][1000 genomes] |
rs212847 | 0.84[ASN][1000 genomes] |
rs212849 | 0.84[ASN][1000 genomes] |
rs212853 | 0.84[ASN][1000 genomes] |
rs212855 | 0.84[ASN][1000 genomes] |
rs212858 | 0.82[ASN][1000 genomes] |
rs2237328 | 0.84[ASN][1000 genomes] |
rs2299102 | 0.83[ASN][1000 genomes] |
rs2391359 | 0.83[ASN][1000 genomes] |
rs2391360 | 0.93[ASN][1000 genomes] |
rs28403911 | 0.93[ASN][1000 genomes] |
rs3801835 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3801846 | 0.95[ASN][1000 genomes] |
rs3801847 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3801848 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3801853 | 0.93[ASN][1000 genomes] |
rs3801854 | 0.93[ASN][1000 genomes] |
rs3801855 | 0.93[ASN][1000 genomes] |
rs3801860 | 0.87[ASN][1000 genomes] |
rs3801864 | 0.90[ASN][1000 genomes] |
rs3801866 | 0.89[ASN][1000 genomes] |
rs3801867 | 0.89[ASN][1000 genomes] |
rs3801868 | 0.86[ASN][1000 genomes] |
rs3823939 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4345466 | 0.93[ASN][1000 genomes] |
rs4512299 | 0.93[ASN][1000 genomes] |
rs4573150 | 0.87[ASN][1000 genomes] |
rs4719879 | 0.87[ASN][1000 genomes] |
rs4722631 | 0.87[ASN][1000 genomes] |
rs4722633 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4722634 | 0.87[ASN][1000 genomes] |
rs5012512 | 0.93[ASN][1000 genomes] |
rs55836768 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55904994 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56359409 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58988613 | 0.87[ASN][1000 genomes] |
rs6461961 | 0.84[ASN][1000 genomes] |
rs6461964 | 0.87[ASN][1000 genomes] |
rs6461965 | 0.90[ASN][1000 genomes] |
rs6461971 | 0.93[ASN][1000 genomes] |
rs6461973 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6461974 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6461975 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6461976 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6943568 | 0.83[ASN][1000 genomes] |
rs6944529 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6965167 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6970591 | 0.90[ASN][1000 genomes] |
rs6973237 | 0.87[ASN][1000 genomes] |
rs73065526 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs744611 | 0.93[ASN][1000 genomes] |
rs744612 | 0.93[ASN][1000 genomes] |
rs7777316 | 0.87[ASN][1000 genomes] |
rs7777744 | 0.87[ASN][1000 genomes] |
rs7779604 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7779843 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7784206 | 0.90[ASN][1000 genomes] |
rs7784548 | 0.87[ASN][1000 genomes] |
rs7788165 | 0.84[ASN][1000 genomes] |
rs7793663 | 0.93[ASN][1000 genomes] |
rs7794399 | 0.90[ASN][1000 genomes] |
rs7798696 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7799888 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7802514 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7802852 | 0.87[ASN][1000 genomes] |
rs7807640 | 0.93[ASN][1000 genomes] |
rs7810109 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7810127 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7811764 | 0.84[ASN][1000 genomes] |
rs891874 | 0.93[ASN][1000 genomes] |
rs891875 | 0.93[ASN][1000 genomes] |
rs891876 | 0.93[ASN][1000 genomes] |
rs934410 | 0.93[ASN][1000 genomes] |
rs9648018 | 0.90[ASN][1000 genomes] |
rs9648020 | 0.84[ASN][1000 genomes] |
rs9648021 | 0.87[ASN][1000 genomes] |
rs9648330 | 0.87[ASN][1000 genomes] |
rs9648331 | 0.85[ASN][1000 genomes] |
rs9770851 | 0.85[ASN][1000 genomes] |
rs989250 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
3 | nsv887855 | chr7:26823963-26872652 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:26808000-26854800 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
2 | chr7:26812400-26849000 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
3 | chr7:26812800-26841600 | Weak transcription | Primary hematopoietic stem cells | blood |
4 | chr7:26813000-26871200 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
5 | chr7:26821000-26843000 | Weak transcription | Fetal Lung | lung |
6 | chr7:26823000-26846400 | Weak transcription | Primary B cells from peripheral blood | blood |
7 | chr7:26823400-26839600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
8 | chr7:26825400-26872400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
9 | chr7:26834400-26838600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
10 | chr7:26834600-26839000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
11 | chr7:26834600-26841600 | Weak transcription | Primary monocytes fromperipheralblood | blood |
12 | chr7:26835400-26840200 | Weak transcription | Right Atrium | heart |
13 | chr7:26836600-26846200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
14 | chr7:26837400-26842800 | Weak transcription | Primary B cells from cord blood | blood |