Variant report

Variant	rs13186
Chromosome Location	chr7:26707657-26707658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:26408877..26409777-chr7:26706557..26707867,5	K562	blood:
2	chr7:26705980..26708801-chr7:26709230..26711204,3	K562	blood:
3	chr7:26416346..26417264-chr7:26706784..26707684,6	MCF-7	breast:
4	chr7:26588899..26589576-chr7:26706937..26707768,2	MCF-7	breast:
5	chr7:26416040..26417569-chr7:26706693..26708540,2	MCF-7	breast:
6	chr7:26407824..26409906-chr7:26706446..26707818,12	MCF-7	breast:
7	chr7:26416373..26417270-chr7:26706909..26707815,11	MCF-7	breast:
8	chr7:26624734..26625596-chr7:26706998..26707945,8	MCF-7	breast:
9	chr7:26540332..26541062-chr7:26707307..26707867,3	MCF-7	breast:
10	chr7:25932106..25933106-chr7:26707000..26708058,3	K562	blood:
11	chr7:26705980..26708801-chr7:26709438..26711204,2	K562	blood:
12	chr7:26408832..26410672-chr7:26706732..26707750,14	MCF-7	breast:
13	chr7:26407856..26408734-chr7:26707178..26708194,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000225792	Chromatin interaction

Extended variants
information (count: 251 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:245)

rs_ID	r²[population]
rs10085721	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10224133	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10227140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs10227231	1.00[CHB][hapmap]
rs10227673	1.00[CHB][hapmap]
rs10227898	1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs10231161	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10232697	0.94[EUR][1000 genomes]
rs10232770	0.91[EUR][1000 genomes]
rs10232778	0.92[EUR][1000 genomes]
rs10237921	0.80[ASN][1000 genomes]
rs10238253	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10239608	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10241952	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10242572	1.00[CHB][hapmap]
rs1024454	0.84[CEU][hapmap]
rs10245162	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10245367	0.80[ASN][1000 genomes]
rs10246641	0.80[ASN][1000 genomes]
rs10247509	0.94[EUR][1000 genomes]
rs10250223	0.82[ASN][1000 genomes]
rs10255249	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10256250	1.00[CHB][hapmap]
rs10256561	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10256799	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10263118	0.92[EUR][1000 genomes]
rs10267950	1.00[CHB][hapmap]
rs10269731	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10270187	1.00[CHB][hapmap]
rs10272190	1.00[CHB][hapmap]
rs10272457	1.00[CHB][hapmap]
rs10273468	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs10276471	1.00[CHB][hapmap]
rs10276636	0.94[EUR][1000 genomes]
rs10281261	1.00[CHB][hapmap]
rs1030644	0.93[EUR][1000 genomes]
rs10486478	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs10486483	1.00[CHB][hapmap]
rs10486485	1.00[CHB][hapmap]
rs10807834	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10951145	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1123156	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1123157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1123158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11764558	0.84[CEU][hapmap]
rs11770043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770344	0.84[CEU][hapmap]
rs11772673	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11773029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11773050	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12532339	0.80[ASN][1000 genomes]
rs12532796	1.00[CHB][hapmap]
rs12534899	1.00[CHB][hapmap]
rs12535078	0.80[ASN][1000 genomes]
rs12535784	1.00[CHB][hapmap]
rs12536560	1.00[CHB][hapmap]
rs12537323	1.00[CHB][hapmap]
rs12540388	1.00[CHB][hapmap]
rs12668948	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12700754	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12700755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12700757	0.84[CEU][hapmap]
rs12700758	0.96[CEU][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12700759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12700760	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12700761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12700762	0.84[CEU][hapmap]
rs13229947	1.00[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs13234201	0.89[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs13234336	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1327988	1.00[CHB][hapmap]
rs1327989	1.00[CHB][hapmap]
rs13438513	1.00[CHB][hapmap]
rs13438514	1.00[CHB][hapmap]
rs1468203	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1548022	0.84[CEU][hapmap]
rs1548478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1548479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1548481	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17315775	1.00[CHB][hapmap]
rs17315929	1.00[CHB][hapmap]
rs17323934	1.00[CHB][hapmap]
rs17372780	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs1859101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2015543	0.84[ASN][1000 genomes]
rs2017794	0.93[EUR][1000 genomes]
rs2023819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2023821	0.82[EUR][1000 genomes]
rs2030136	1.00[CHB][hapmap]
rs2031811	1.00[CHB][hapmap]
rs2082365	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs2106905	1.00[CHB][hapmap]
rs212840	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs212842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs212845	0.82[EUR][1000 genomes]
rs212846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212847	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212849	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212850	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212851	0.86[ASW][hapmap];0.80[CEU][hapmap];0.83[GIH][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs212852	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212854	0.87[CEU][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs212855	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs212857	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189016	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2189017	1.00[CHB][hapmap]
rs2189019	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs2237328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299101	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2299102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391359	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2391360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2391362	1.00[CHB][hapmap]
rs2769365	0.91[JPT][hapmap]
rs28403911	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757654	1.00[CHB][hapmap]
rs3801803	1.00[CHB][hapmap]
rs3801805	1.00[CHB][hapmap]
rs3801806	0.91[JPT][hapmap]
rs3801807	1.00[CHB][hapmap]
rs3801808	1.00[CHB][hapmap]
rs3801810	1.00[CHB][hapmap]
rs3801812	1.00[CHB][hapmap]
rs3801813	1.00[CHB][hapmap]
rs3801814	1.00[CHB][hapmap]
rs3801815	1.00[CHB][hapmap]
rs3801816	1.00[CHB][hapmap]
rs3801819	1.00[CHB][hapmap]
rs3801820	1.00[CHB][hapmap]
rs3801821	1.00[CHB][hapmap]
rs3801825	1.00[CHB][hapmap]
rs3801827	1.00[CHB][hapmap]
rs3801828	1.00[CHB][hapmap]
rs3801830	1.00[CHB][hapmap]
rs3801840	1.00[CHB][hapmap]
rs3801842	1.00[CHB][hapmap]
rs3801843	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs3801844	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs3801846	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs3801847	0.82[ASN][1000 genomes]
rs3801848	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs3801850	1.00[CHB][hapmap]
rs3801853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801854	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801855	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801857	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3801860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3801864	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3801866	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801867	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801868	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801872	0.86[ASW][hapmap];0.84[CEU][hapmap];0.83[GIH][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs3823932	1.00[CHB][hapmap]
rs3823933	1.00[CHB][hapmap]
rs3823934	1.00[CHB][hapmap]
rs3823936	1.00[CHB][hapmap]
rs3823939	0.82[ASN][1000 genomes]
rs4345466	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4512299	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4573150	0.93[EUR][1000 genomes]
rs4719877	1.00[CHB][hapmap]
rs4719879	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4722628	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4722630	1.00[CHB][hapmap]
rs4722631	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4722633	0.84[ASN][1000 genomes]
rs4722634	0.93[EUR][1000 genomes]
rs5012512	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs503110	0.91[JPT][hapmap]
rs55836768	0.80[ASN][1000 genomes]
rs55904994	0.80[ASN][1000 genomes]
rs56359409	0.80[ASN][1000 genomes]
rs570840	0.90[JPT][hapmap]
rs58988613	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs607099	0.91[JPT][hapmap]
rs6461961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461962	1.00[CHB][hapmap]
rs6461963	1.00[CHB][hapmap]
rs6461964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6461971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6461973	0.80[ASN][1000 genomes]
rs6461979	1.00[CHB][hapmap]
rs667841	0.91[JPT][hapmap]
rs6943568	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6943623	0.93[EUR][1000 genomes]
rs6944529	0.80[ASN][1000 genomes]
rs6948657	1.00[CHB][hapmap]
rs6951065	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6964094	1.00[CHB][hapmap]
rs6964817	1.00[CHB][hapmap]
rs6965167	0.80[ASN][1000 genomes]
rs6970591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6971397	1.00[CHB][hapmap]
rs6972378	1.00[CHB][hapmap]
rs6973237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs6978504	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs727449	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs727450	1.00[CHB][hapmap]
rs73065526	0.80[ASN][1000 genomes]
rs744611	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs744612	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7457076	1.00[CHB][hapmap]
rs763616	1.00[CHB][hapmap]
rs7777316	0.94[EUR][1000 genomes]
rs7777744	0.91[EUR][1000 genomes]
rs7779604	0.80[ASN][1000 genomes]
rs7779843	0.80[ASN][1000 genomes]
rs7784206	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7784548	0.94[EUR][1000 genomes]
rs7785832	1.00[CHB][hapmap]
rs7788165	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791513	1.00[CHB][hapmap]
rs7793663	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7794399	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7795074	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7795313	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs7798696	0.80[ASN][1000 genomes]
rs7799888	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7802771	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7802852	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7803699	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7804356	1.00[CHB][hapmap]
rs7805766	1.00[CHB][hapmap]
rs7807640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7810109	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7810127	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7811764	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs891874	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs891875	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs891876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs934410	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9648018	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9648020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs9648021	0.92[EUR][1000 genomes]
rs9648330	0.93[EUR][1000 genomes]
rs9648331	0.93[EUR][1000 genomes]
rs9770851	0.89[EUR][1000 genomes]
rs989250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13186	SKAP2	cis	cerebellum	SCAN
rs13186	SKAP2	cis	Whole Blood	GTEx
rs13186	EVX1	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26678800-26715400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:26679400-26710000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:26696800-26708000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:26702200-26707800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:26703400-26709600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:26704800-26712800	Weak transcription	Primary B cells from cord blood	blood
7	chr7:26705000-26707800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:26705000-26714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:26705000-26714600	Weak transcription	NHLF	lung
10	chr7:26705000-26716000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:26706800-26708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:26707000-26707800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:26707000-26707800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:26707000-26707800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:26707000-26707800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:26707000-26707800	Enhancers	Brain Anterior Caudate	brain
18	chr7:26707000-26709600	Enhancers	Primary hematopoietic stem cells	blood
19	chr7:26707200-26721800	Weak transcription	Fetal Lung	lung
20	chr7:26707400-26707800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr7:26707400-26707800	Enhancers	HepG2	liver
22	chr7:26707400-26714600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:26707400-26715600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:26707600-26710200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:26707600-26711200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:26707600-26714400	Weak transcription	NHEK	skin
27	chr7:26707600-26714800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:26707600-26719000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links