Variant report

Variant	rs212850
Chromosome Location	chr7:26724279-26724280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26723957..26726724-chr7:27181666..27184631,2	MCF-7	breast:
2	chr7:26723322..26725010-chr7:27199019..27201675,2	MCF-7	breast:
3	chr7:26723927..26726163-chr7:26727475..26729887,2	K562	blood:

Variant related genes	Relation type
ENSG00000106004	Chromatin interaction

Extended variants
information (count: 253 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:246)

rs_ID	r²[population]
rs10085721	1.00[CHB][hapmap]
rs10215738	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10225700	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10225924	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10227140	1.00[CHB][hapmap]
rs10227231	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10227529	0.86[ASN][1000 genomes]
rs10227673	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10227898	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10229837	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10231161	1.00[CHB][hapmap]
rs10236221	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10239608	1.00[CHB][hapmap]
rs10242572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10244986	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10248500	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10251839	0.86[ASN][1000 genomes]
rs10256250	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10256561	1.00[CHB][hapmap]
rs10256799	0.89[CHB][hapmap]
rs10261915	1.00[CHB][hapmap]
rs10262414	0.88[CEU][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10267950	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10269731	1.00[CHB][hapmap]
rs10270187	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10272190	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10272301	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272303	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272457	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10272603	0.86[ASN][1000 genomes]
rs10273468	1.00[CHB][hapmap]
rs10275896	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10276471	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10281261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486478	1.00[ASW][hapmap];0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486483	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs10486485	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10951145	0.89[CHB][hapmap];0.94[CHD][hapmap]
rs10951149	1.00[CHB][hapmap]
rs1123156	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1123157	1.00[CHB][hapmap]
rs1123158	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11770043	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11772673	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11773029	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs12333525	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532199	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532395	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532796	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534899	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12534921	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12535784	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12536145	0.86[ASN][1000 genomes]
rs12536560	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537014	0.81[ASN][1000 genomes]
rs12537323	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12539719	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12540045	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12540388	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12540508	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12700755	1.00[CHB][hapmap]
rs12700759	1.00[CHB][hapmap]
rs12700761	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs13186	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs13229947	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs13234201	0.89[CHB][hapmap]
rs13234336	1.00[CHB][hapmap]
rs1327988	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1327989	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13438513	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13438514	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1468203	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1548478	1.00[CHB][hapmap]
rs1548479	1.00[CHB][hapmap]
rs1548481	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs17315334	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17315775	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17315929	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17323934	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs17372780	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs17375272	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17376018	0.86[ASN][1000 genomes]
rs1859101	1.00[CHB][hapmap]
rs1967332	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1982995	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2015649	0.87[ASN][1000 genomes]
rs2023819	1.00[CHB][hapmap]
rs2030136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2031811	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2082365	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2106905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs212838	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs212842	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212844	1.00[CHB][hapmap]
rs212846	1.00[CHB][hapmap]
rs212847	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212852	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212853	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs212856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212858	1.00[CHB][hapmap]
rs2189016	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2189017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237328	1.00[CHB][hapmap]
rs2282906	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs2299102	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs2391360	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs2391362	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28404962	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28550029	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28617235	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28733208	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28806787	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28816386	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28883078	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3213853	0.86[ASN][1000 genomes]
rs3757654	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801803	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3801805	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801807	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs3801808	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801809	0.86[ASN][1000 genomes]
rs3801810	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3801812	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801813	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3801814	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801815	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3801819	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801820	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801821	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801822	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801823	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801825	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801826	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801828	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801829	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801830	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801831	0.89[CEU][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801832	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801833	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3801834	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3801836	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801837	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3801840	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801842	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801843	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801844	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801846	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs3801848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3801850	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3801853	1.00[CHB][hapmap]
rs3801857	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3801860	1.00[CHB][hapmap]
rs3801864	1.00[CHB][hapmap]
rs3823928	0.86[ASN][1000 genomes]
rs3823929	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823930	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823931	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823932	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823933	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823934	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823936	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823938	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3934268	0.86[ASN][1000 genomes]
rs4719877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719882	0.86[ASN][1000 genomes]
rs4722630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722631	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs4722641	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722643	0.86[ASN][1000 genomes]
rs4722644	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4722647	0.86[ASN][1000 genomes]
rs5012512	0.89[CHB][hapmap]
rs55739485	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56154570	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57135974	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57623217	0.86[ASN][1000 genomes]
rs58760954	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59254259	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61354389	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6461961	1.00[CHB][hapmap]
rs6461962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6461963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461964	1.00[CHB][hapmap]
rs6461965	1.00[CHB][hapmap]
rs6461971	1.00[CHB][hapmap]
rs6461979	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6461980	0.86[ASN][1000 genomes]
rs6948584	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6948657	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6951065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956088	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6964094	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6964817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970591	1.00[CHB][hapmap]
rs6971397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6972378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973237	1.00[CHB][hapmap]
rs727449	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs727450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73061894	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73065504	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73065517	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73065521	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067435	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067437	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067443	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73067456	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067472	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067475	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067476	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73067479	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73069507	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73069510	0.86[ASN][1000 genomes]
rs73069533	0.86[ASN][1000 genomes]
rs73069539	0.84[ASN][1000 genomes]
rs73069540	0.84[ASN][1000 genomes]
rs73069541	0.84[ASN][1000 genomes]
rs7457076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs763616	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7782621	0.87[ASN][1000 genomes]
rs7785689	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785711	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785798	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7785832	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7785918	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7791513	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7795074	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs7799888	1.00[CHB][hapmap]
rs7802688	0.88[ASN][1000 genomes]
rs7803699	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7804356	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs7804620	0.86[ASN][1000 genomes]
rs7805766	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7805778	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7807640	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs7810109	1.00[CHB][hapmap]
rs7810127	1.00[CHB][hapmap]
rs891876	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs9648019	0.86[ASN][1000 genomes]
rs9648020	1.00[CHB][hapmap]
rs989250	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020378	chr7:26679880-26733872	Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv5672	chr7:26711462-26757891	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs212850	HOXA3	cis	cerebellum	SCAN
rs212850	SKAP2	cis	parietal	SCAN
rs212850	SKAP2	cis	cerebellum	SCAN
rs212850	HOXA9	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26705000-26759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:26708800-26725600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:26715000-26731200	Weak transcription	Lung	lung
4	chr7:26715600-26724600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:26715600-26725200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:26715600-26725200	Weak transcription	NHEK	skin
7	chr7:26715600-26725400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:26715600-26726000	Weak transcription	Osteobl	bone
9	chr7:26715600-26726200	Weak transcription	HMEC	breast
10	chr7:26716400-26726000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:26716400-26728200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:26716800-26729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:26720800-26728600	Weak transcription	Spleen	Spleen
14	chr7:26721000-26724600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:26721000-26726000	Weak transcription	Fetal Intestine Large	intestine
16	chr7:26721000-26726200	Weak transcription	Fetal Intestine Small	intestine
17	chr7:26721200-26726000	Weak transcription	HepG2	liver
18	chr7:26721600-26724800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:26721600-26725000	Enhancers	HUVEC	blood vessel
20	chr7:26721800-26724400	Bivalent Enhancer	Fetal Lung	lung
21	chr7:26722200-26726400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:26722200-26728800	Weak transcription	Small Intestine	intestine
23	chr7:26722400-26724400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr7:26722600-26725000	Weak transcription	Adipose Nuclei	Adipose
25	chr7:26722600-26728600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:26723000-26725200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:26723000-26728000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:26723200-26724400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:26723400-26724600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:26724200-26724400	Strong transcription	Primary B cells from cord blood	blood
31	chr7:26724200-26724600	Enhancers	Stomach Mucosa	stomach
32	chr7:26724200-26728200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Variant report

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