Variant report

Variant	rs73069541
Chromosome Location	chr7:26904928-26904929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:26903470-26904963	ECC-1	luminal epithelium:	n/a	n/a
2	MAX	chr7:26904100-26905043	SK-N-SH	brain:	n/a	n/a
3	GTF2F1	chr7:26903601-26904931	Hela-S3	cervix:	n/a	n/a
4	SIN3AK20	chr7:26903477-26904989	MCF-7	breast:	n/a	n/a
5	MAX	chr7:26903388-26905080	A549	lung:	n/a	n/a
6	USF1	chr7:26904105-26904939	ECC-1	luminal epithelium:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
7	USF1	chr7:26904141-26904958	SK-N-SH	brain:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
8	POLR2A	chr7:26903792-26905036	HUVEC	blood vessel:	n/a	n/a
9	FOSL2	chr7:26903966-26904948	A549	lung:	n/a	chr7:26904755-26904764
10	MAX	chr7:26903563-26904949	ECC-1	luminal epithelium:	n/a	n/a
11	SRF	chr7:26903874-26905022	MCF-7	breast:	n/a	chr7:26904259-26904269
12	POLR2A	chr7:26903564-26905033	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr7:26903634-26904928	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr7:26903539-26905136	IMR90	lung:	n/a	n/a
15	MXI1	chr7:26903000-26904951	GM12878	blood:	n/a	n/a
16	MAX	chr7:26903506-26905026	HepG2	liver:	n/a	n/a
17	POLR2A	chr7:26903249-26904985	Raji	blood:	n/a	n/a
18	POLR2A	chr7:26903430-26904998	HepG2	liver:	n/a	n/a
19	YY1	chr7:26903917-26904933	ECC-1	luminal epithelium:	n/a	chr7:26903938-26903947 chr7:26903938-26903949
20	MAX	chr7:26903649-26904992	A549	lung:	n/a	n/a
21	HEY1	chr7:26903870-26904928	HepG2	liver:	n/a	n/a
22	POLR2A	chr7:26903164-26905316	MCF10A-Er-Src	breast:	n/a	n/a
23	YY1	chr7:26904083-26905028	SK-N-SH	brain:	n/a	n/a
24	E2F6	chr7:26903744-26905228	A549	lung:	n/a	chr7:26903882-26903893 chr7:26903965-26903976 chr7:26904757-26904766
25	RCOR1	chr7:26903502-26904929	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr7:26903808-26904929	PANC-1	pancreas:	n/a	n/a
27	MTA3	chr7:26902977-26905064	GM12878	blood:	n/a	n/a
28	POLR2A	chr7:26903588-26905065	H1-neurons	neurons:	n/a	n/a
29	POLR2A	chr7:26903721-26904962	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr7:26903536-26904928	K562	blood:	n/a	n/a
31	JUN	chr7:26903310-26905050	K562	blood:	n/a	chr7:26904755-26904764
32	POLR2A	chr7:26903869-26904941	U87	brain:	n/a	n/a
33	RFX5	chr7:26903902-26904985	GM12878	blood:	n/a	chr7:26904756-26904765
34	POLR2A	chr7:26903329-26905240	MCF10A-Er-Src	breast:	n/a	n/a
35	ELF1	chr7:26903927-26904941	SK-N-SH	brain:	n/a	n/a
36	ELF1	chr7:26903720-26905033	MCF-7	breast:	n/a	n/a
37	PML	chr7:26903909-26904934	MCF-7	breast:	n/a	n/a
38	ELF1	chr7:26903599-26904933	MCF-7	breast:	n/a	n/a
39	USF1	chr7:26903779-26904951	HCT-116	colon:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
40	TBP	chr7:26903947-26904941	H1-hESC	embryonic stem cell:	n/a	n/a
41	SIX5	chr7:26904346-26905077	A549	lung:	n/a	n/a
42	POLR2A	chr7:26903548-26904964	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr7:26903913-26904974	HUVEC	blood vessel:	n/a	n/a
44	POLR2A	chr7:26903233-26905023	GM12878	blood:	n/a	n/a
45	E2F6	chr7:26903447-26905482	H1-hESC	embryonic stem cell:	n/a	chr7:26903882-26903893 chr7:26903965-26903976 chr7:26904757-26904766
46	POLR2A	chr7:26903748-26905004	HUVEC	blood vessel:	n/a	n/a
47	EP300	chr7:26903567-26904937	GM12878	blood:	n/a	chr7:26904252-26904268 chr7:26904736-26904752
48	POLR2A	chr7:26903882-26904946	HepG2	liver:	n/a	n/a
49	MYC	chr7:26903390-26905141	K562	blood:	n/a	n/a
50	POLR2A	chr7:26903363-26904955	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:26897524..26906359-chr7:27169396..27177834,18	MCF-7	breast:
2	chr17:25620993..25621660-chr7:26903949..26904945,2	Hela-S3	cervix:
3	chr7:26902248..26905091-chr7:27166314..27168813,2	MCF-7	breast:
4	chr7:26902705..26905667-chr7:27132555..27137263,6	MCF-7	breast:
5	chr7:26902947..26905299-chr7:27180909..27183737,2	MCF-7	breast:
6	chr7:26893506..26896293-chr7:26902424..26905026,3	MCF-7	breast:
7	chr7:26903484..26905321-chr7:27183031..27185507,2	MCF-7	breast:
8	chr16:30006435..30007411-chr7:26904217..26905151,2	Hela-S3	cervix:
9	chr7:26902547..26905705-chr7:27166224..27172586,14	MCF-7	breast:
10	chr1:78148075..78148869-chr7:26904203..26904962,2	Hela-S3	cervix:
11	chr19:571770..572640-chr7:26904134..26905037,2	Hela-S3	cervix:
12	chr7:26897760..26899796-chr7:26902533..26905235,3	K562	blood:
13	chr7:26904022..26904979-chr7:100032946..100033867,2	Hela-S3	cervix:

Variant related genes	Relation type
SKAP2	TF binding region
ENSG00000109046	Chromatin interaction
ENSG00000172270	Chromatin interaction
ENSG00000036549	Chromatin interaction
ENSG00000169592	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000005020	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000254369	Chromatin interaction
ENSG00000263583	Chromatin interaction
ENSG00000149929	Chromatin interaction
ENSG00000197576	Chromatin interaction
ENSG00000105991	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000233429	Chromatin interaction

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs10215738	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10225700	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10225904	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10225924	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10227231	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227529	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227553	0.83[ASN][1000 genomes]
rs10227673	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227898	0.82[ASN][1000 genomes]
rs10229837	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10236221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10242572	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10244986	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10248500	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10251839	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256250	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262414	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10267950	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10270187	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272190	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272301	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10272303	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10272457	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272603	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10275896	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10276471	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486478	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486483	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486485	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123156	0.85[ASN][1000 genomes]
rs11980739	0.85[ASN][1000 genomes]
rs12333525	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12530718	0.83[ASN][1000 genomes]
rs12532199	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532395	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532796	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12534899	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534901	0.83[ASN][1000 genomes]
rs12534921	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535784	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536145	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536560	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537014	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537323	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12539719	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540045	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540508	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327988	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1327989	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13438513	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13438514	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468203	0.82[ASN][1000 genomes]
rs1548481	0.82[ASN][1000 genomes]
rs17315334	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17315775	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17315929	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17323934	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375272	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17376018	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17377696	0.83[ASN][1000 genomes]
rs17436410	0.83[ASN][1000 genomes]
rs1967332	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1982995	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030133	0.83[AMR][1000 genomes]
rs2030134	0.83[AMR][1000 genomes]
rs2030136	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs212848	0.84[ASN][1000 genomes]
rs212850	0.84[ASN][1000 genomes]
rs212856	0.84[ASN][1000 genomes]
rs212857	0.84[ASN][1000 genomes]
rs2189016	0.82[ASN][1000 genomes]
rs2189017	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2189019	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2391362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462904	0.83[ASN][1000 genomes]
rs2462910	0.83[ASN][1000 genomes]
rs2465271	0.83[ASN][1000 genomes]
rs2648076	0.83[ASN][1000 genomes]
rs2693662	0.83[ASN][1000 genomes]
rs2693665	0.83[ASN][1000 genomes]
rs2712242	0.83[ASN][1000 genomes]
rs2712244	0.83[ASN][1000 genomes]
rs2712245	0.83[ASN][1000 genomes]
rs28404962	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28550029	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28617235	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733208	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28806787	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28816386	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28883078	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3213853	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757654	0.81[ASN][1000 genomes]
rs3801803	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801805	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801807	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801808	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801809	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801810	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801812	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801813	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801814	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801815	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801816	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801819	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801821	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801822	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801823	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801825	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801827	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801828	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801829	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801830	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801831	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801832	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801834	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801836	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801837	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801840	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801842	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801843	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801844	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801846	0.90[EUR][1000 genomes]
rs3801850	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823928	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823929	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823930	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823931	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823932	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823933	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823934	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823936	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823938	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3934268	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4719877	0.84[ASN][1000 genomes]
rs4719882	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722630	0.84[ASN][1000 genomes]
rs4722641	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722643	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722644	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722647	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55739485	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55959127	0.85[ASN][1000 genomes]
rs56154570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57135974	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57623217	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58760954	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59254259	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61354389	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461962	0.83[ASN][1000 genomes]
rs6461963	0.84[ASN][1000 genomes]
rs6461970	0.85[ASN][1000 genomes]
rs6461979	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461980	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948584	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6948657	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6951065	0.84[ASN][1000 genomes]
rs6956088	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964094	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964817	0.84[ASN][1000 genomes]
rs6971397	0.84[ASN][1000 genomes]
rs6972378	0.84[ASN][1000 genomes]
rs727449	0.82[ASN][1000 genomes]
rs727450	0.84[ASN][1000 genomes]
rs73061894	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73065504	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73065517	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73065521	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067435	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067437	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067443	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73067456	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067472	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067475	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067476	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067479	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73069507	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069510	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069533	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73069540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457076	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs763616	0.82[ASN][1000 genomes]
rs7785689	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785711	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785798	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785815	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785832	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7785918	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791513	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7795074	0.82[ASN][1000 genomes]
rs7802688	0.80[ASN][1000 genomes]
rs7802715	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7803699	0.85[ASN][1000 genomes]
rs7804356	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7804620	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805766	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9648019	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26902600-26905000	Active TSS	NHLF	lung
2	chr7:26902800-26905000	Active TSS	Brain Hippocampus Middle	brain
3	chr7:26902800-26905000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:26902800-26905000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr7:26903000-26905000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:26903000-26905000	Active TSS	Fetal Intestine Large	intestine
7	chr7:26903000-26905000	Bivalent/Poised TSS	Fetal Lung	lung
8	chr7:26903000-26905200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:26903000-26905200	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr7:26903200-26905000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr7:26903200-26905000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:26903200-26905000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:26903200-26905000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:26903200-26905000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:26903200-26905000	Active TSS	Colonic Mucosa	Colon
16	chr7:26903200-26905000	Active TSS	Thymus	Thymus
17	chr7:26903200-26905200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr7:26903200-26905200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:26903200-26905200	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr7:26903200-26905200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:26903200-26905200	Active TSS	Brain Substantia Nigra	brain
22	chr7:26903400-26905000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr7:26903400-26905000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:26903400-26905000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr7:26903400-26905000	Active TSS	Liver	Liver
26	chr7:26903400-26905000	Active TSS	Brain Angular Gyrus	brain
27	chr7:26903400-26905000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
28	chr7:26903400-26905000	Active TSS	Brain Cingulate Gyrus	brain
29	chr7:26903400-26905000	Active TSS	Right Atrium	heart
30	chr7:26903400-26905000	Active TSS	Sigmoid Colon	Sigmoid Colon
31	chr7:26903400-26905000	Active TSS	Monocytes-CD14+_RO01746	blood
32	chr7:26903400-26905000	Active TSS	NHDF-Ad	bronchial
33	chr7:26903400-26905200	Active TSS	Aorta	Aorta
34	chr7:26903600-26905000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:26903600-26905000	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr7:26903600-26905000	Active TSS	Muscle Satellite Cultured Cells	--
37	chr7:26903600-26905000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
38	chr7:26903600-26905000	Bivalent/Poised TSS	Fetal Brain Female	brain
39	chr7:26903600-26905000	Active TSS	Ovary	ovary
40	chr7:26903600-26905000	Active TSS	Rectal Smooth Muscle	rectum
41	chr7:26903600-26905000	Active TSS	HSMM	muscle
42	chr7:26903600-26905000	Active TSS	Osteobl	bone
43	chr7:26903600-26905200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:26903600-26905200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:26903800-26905000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr7:26903800-26905200	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:26904000-26905000	Active TSS	H1 Cell Line	embryonic stem cell
48	chr7:26904000-26905000	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr7:26904000-26905000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
50	chr7:26904000-26905200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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