Variant report

Variant	rs73069540
Chromosome Location	chr7:26904770-26904771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:26903470-26904963	ECC-1	luminal epithelium:	n/a	n/a
2	RAD21	chr7:26903598-26904790	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr7:26904100-26905043	SK-N-SH	brain:	n/a	n/a
4	TEAD4	chr7:26904345-26904808	HepG2	liver:	n/a	n/a
5	HA-E2F1	chr7:26903722-26904922	MCF-7	breast:	n/a	chr7:26904757-26904766
6	USF1	chr7:26904086-26904785	A549	lung:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
7	SMARCB1	chr7:26903697-26904799	Hela-S3	cervix:	n/a	n/a
8	MAX	chr7:26904102-26904794	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr7:26903829-26904895	K562	blood:	n/a	n/a
10	POLR2A	chr7:26903888-26904830	NB4	blood:	n/a	n/a
11	POLR2A	chr7:26904120-26904863	H1-hESC	embryonic stem cell:	n/a	n/a
12	TBP	chr7:26904006-26904819	Hela-S3	cervix:	n/a	n/a
13	GTF2F1	chr7:26903601-26904931	Hela-S3	cervix:	n/a	n/a
14	SIN3AK20	chr7:26903369-26904818	PANC-1	pancreas:	n/a	n/a
15	SIN3AK20	chr7:26903477-26904989	MCF-7	breast:	n/a	n/a
16	POLR2A	chr7:26904294-26904888	H1-hESC	embryonic stem cell:	n/a	n/a
17	USF1	chr7:26904137-26904799	H1-hESC	embryonic stem cell:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
18	REST	chr7:26903607-26904825	A549	lung:	n/a	n/a
19	MAX	chr7:26903388-26905080	A549	lung:	n/a	n/a
20	BRCA1	chr7:26904351-26904795	H1-hESC	embryonic stem cell:	n/a	n/a
21	BCL3	chr7:26904312-26904886	A549	lung:	n/a	n/a
22	USF1	chr7:26904105-26904939	ECC-1	luminal epithelium:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
23	USF1	chr7:26904141-26904958	SK-N-SH	brain:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
24	KAP1	chr7:26903584-26904809	HEK293	kidney:	n/a	n/a
25	POLR2A	chr7:26903436-26904852	GM12891	blood:	n/a	n/a
26	MAX	chr7:26903935-26904853	HepG2	liver:	n/a	n/a
27	YY1	chr7:26904307-26904868	NT2-D1	testis:	n/a	n/a
28	YY1	chr7:26904095-26904846	K562	blood:	n/a	n/a
29	POLR2A	chr7:26903566-26904888	Hela-S3	cervix:	n/a	n/a
30	YY1	chr7:26904228-26904860	H1-hESC	embryonic stem cell:	n/a	n/a
31	USF1	chr7:26904188-26904862	SK-N-SH_RA	brain:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
32	MBD4	chr7:26904363-26904810	HepG2	liver:	n/a	n/a
33	RUNX3	chr7:26903885-26904799	GM12878	blood:	n/a	n/a
34	E2F6	chr7:26904574-26904832	K562	blood:	n/a	chr7:26904757-26904766
35	SIN3A	chr7:26903323-26904770	H1-hESC	embryonic stem cell:	n/a	n/a
36	E2F4	chr7:26903839-26904916	MCF10A-Er-Src	breast:	n/a	chr7:26904757-26904766
37	MYBL2	chr7:26903868-26904822	HepG2	liver:	n/a	n/a
38	POLR2A	chr7:26903792-26905036	HUVEC	blood vessel:	n/a	n/a
39	MXI1	chr7:26904015-26904774	H1-hESC	embryonic stem cell:	n/a	n/a
40	POLR2A	chr7:26903600-26904781	Hela-S3	cervix:	n/a	n/a
41	UBTF	chr7:26903663-26904895	K562	blood:	n/a	n/a
42	USF1	chr7:26903763-26904805	ECC-1	luminal epithelium:	n/a	chr7:26904737-26904753 chr7:26904439-26904450 chr7:26904455-26904466
43	TBP	chr7:26904015-26904798	HepG2	liver:	n/a	n/a
44	FOSL2	chr7:26903966-26904948	A549	lung:	n/a	chr7:26904755-26904764
45	MYC	chr7:26904021-26904773	NB4	blood:	n/a	n/a
46	TAF1	chr7:26903713-26904915	A549	lung:	n/a	n/a
47	ZKSCAN1	chr7:26904053-26904897	Hela-S3	cervix:	n/a	n/a
48	MAX	chr7:26903563-26904949	ECC-1	luminal epithelium:	n/a	n/a
49	POLR2A	chr7:26903103-26904915	GM19099	blood:	n/a	n/a
50	SRF	chr7:26903874-26905022	MCF-7	breast:	n/a	chr7:26904259-26904269

No.	Distal block	Cell Line	Cell type
1	chr7:26897524..26906359-chr7:27169396..27177834,18	MCF-7	breast:
2	chr17:25620993..25621660-chr7:26903949..26904945,2	Hela-S3	cervix:
3	chr7:26902248..26905091-chr7:27166314..27168813,2	MCF-7	breast:
4	chr7:26902705..26905667-chr7:27132555..27137263,6	MCF-7	breast:
5	chr7:26902947..26905299-chr7:27180909..27183737,2	MCF-7	breast:
6	chr7:26893506..26896293-chr7:26902424..26905026,3	MCF-7	breast:
7	chr7:26903484..26905321-chr7:27183031..27185507,2	MCF-7	breast:
8	chr16:30006435..30007411-chr7:26904217..26905151,2	Hela-S3	cervix:
9	chr7:26902547..26905705-chr7:27166224..27172586,14	MCF-7	breast:
10	chr1:78148075..78148869-chr7:26904203..26904962,2	Hela-S3	cervix:
11	chr5:10353277..10353922-chr7:26904155..26904846,2	Hela-S3	cervix:
12	chr19:571770..572640-chr7:26904134..26905037,2	Hela-S3	cervix:
13	chr7:26897760..26899796-chr7:26902533..26905235,3	K562	blood:
14	chr7:26904022..26904979-chr7:100032946..100033867,2	Hela-S3	cervix:

Variant related genes	Relation type
SKAP2	TF binding region
ENSG00000254369	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000036549	Chromatin interaction
ENSG00000149929	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000263583	Chromatin interaction
ENSG00000105991	Chromatin interaction
ENSG00000169592	Chromatin interaction
ENSG00000005020	Chromatin interaction
ENSG00000109046	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000233429	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000197576	Chromatin interaction
ENSG00000172270	Chromatin interaction
ENSG00000259802	Chromatin interaction
ENSG00000145495	Chromatin interaction

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs10215738	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10225700	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10225904	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10225924	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10227231	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227529	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227553	0.83[ASN][1000 genomes]
rs10227673	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227898	0.82[ASN][1000 genomes]
rs10229837	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10236221	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10242572	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10244986	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10248500	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10251839	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256250	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10262414	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10267950	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10270187	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272190	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272301	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10272303	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10272457	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272603	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10275896	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10276471	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486478	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10486483	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486485	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123156	0.85[ASN][1000 genomes]
rs11980739	0.85[ASN][1000 genomes]
rs12333525	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12530718	0.83[ASN][1000 genomes]
rs12532199	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532395	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532796	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12534899	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12534901	0.83[ASN][1000 genomes]
rs12534921	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12535784	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536145	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536560	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12537014	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537323	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12539719	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12540045	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540508	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327988	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1327989	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13438513	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13438514	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468203	0.82[ASN][1000 genomes]
rs1548481	0.82[ASN][1000 genomes]
rs17315334	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17315775	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17315929	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17323934	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375272	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17376018	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17377696	0.83[ASN][1000 genomes]
rs17436410	0.83[ASN][1000 genomes]
rs1967332	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1982995	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030133	0.83[AMR][1000 genomes]
rs2030134	0.83[AMR][1000 genomes]
rs2030136	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031811	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs212848	0.84[ASN][1000 genomes]
rs212850	0.84[ASN][1000 genomes]
rs212856	0.84[ASN][1000 genomes]
rs212857	0.84[ASN][1000 genomes]
rs2189016	0.82[ASN][1000 genomes]
rs2189017	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2189019	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2391362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462904	0.83[ASN][1000 genomes]
rs2462910	0.83[ASN][1000 genomes]
rs2465271	0.83[ASN][1000 genomes]
rs2648076	0.83[ASN][1000 genomes]
rs2693662	0.83[ASN][1000 genomes]
rs2693665	0.83[ASN][1000 genomes]
rs2712242	0.83[ASN][1000 genomes]
rs2712244	0.83[ASN][1000 genomes]
rs2712245	0.83[ASN][1000 genomes]
rs28404962	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28550029	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28617235	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733208	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28806787	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28816386	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28883078	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3213853	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757654	0.81[ASN][1000 genomes]
rs3801803	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801805	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801807	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801808	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801809	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801810	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801812	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801813	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801814	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801815	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801816	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801819	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801821	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801822	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801823	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801825	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801827	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801828	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801829	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801830	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801831	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801832	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801834	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801836	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801837	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801840	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801842	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801843	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801844	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801846	0.90[EUR][1000 genomes]
rs3801850	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823928	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823929	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823930	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823931	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823932	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823933	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823934	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823936	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823938	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3934268	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4719877	0.84[ASN][1000 genomes]
rs4719882	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722630	0.84[ASN][1000 genomes]
rs4722641	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722643	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722644	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4722647	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55739485	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55959127	0.85[ASN][1000 genomes]
rs56154570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57135974	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57623217	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58760954	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59254259	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61354389	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461962	0.83[ASN][1000 genomes]
rs6461963	0.84[ASN][1000 genomes]
rs6461970	0.85[ASN][1000 genomes]
rs6461979	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6461980	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948584	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6948657	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6951065	0.84[ASN][1000 genomes]
rs6956088	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964094	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6964817	0.84[ASN][1000 genomes]
rs6971397	0.84[ASN][1000 genomes]
rs6972378	0.84[ASN][1000 genomes]
rs727449	0.82[ASN][1000 genomes]
rs727450	0.84[ASN][1000 genomes]
rs73061894	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73065504	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73065517	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73065521	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067435	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067437	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067443	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73067456	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067472	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067475	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067476	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73067479	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73069507	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069510	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069533	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73069539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73069541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457076	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs763616	0.82[ASN][1000 genomes]
rs7785689	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785711	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785798	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785815	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7785832	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7785918	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791513	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7795074	0.82[ASN][1000 genomes]
rs7802688	0.80[ASN][1000 genomes]
rs7802715	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7803699	0.85[ASN][1000 genomes]
rs7804356	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7804620	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805766	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9648019	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26902400-26904800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:26902400-26904800	Active TSS	GM12878-XiMat	blood
3	chr7:26902600-26905000	Active TSS	NHLF	lung
4	chr7:26902800-26904800	Active TSS	Primary monocytes fromperipheralblood	blood
5	chr7:26902800-26904800	Active TSS	NHEK	skin
6	chr7:26902800-26905000	Active TSS	Brain Hippocampus Middle	brain
7	chr7:26902800-26905000	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr7:26902800-26905000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr7:26903000-26904800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:26903000-26904800	Active TSS	K562	blood
11	chr7:26903000-26905000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:26903000-26905000	Active TSS	Fetal Intestine Large	intestine
13	chr7:26903000-26905000	Bivalent/Poised TSS	Fetal Lung	lung
14	chr7:26903000-26905200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr7:26903000-26905200	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr7:26903200-26904800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:26903200-26904800	Active TSS	Primary B cells from peripheral blood	blood
18	chr7:26903200-26904800	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr7:26903200-26904800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr7:26903200-26904800	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr7:26903200-26904800	Active TSS	Stomach Mucosa	stomach
22	chr7:26903200-26905000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr7:26903200-26905000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:26903200-26905000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:26903200-26905000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:26903200-26905000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:26903200-26905000	Active TSS	Colonic Mucosa	Colon
28	chr7:26903200-26905000	Active TSS	Thymus	Thymus
29	chr7:26903200-26905200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr7:26903200-26905200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:26903200-26905200	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr7:26903200-26905200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:26903200-26905200	Active TSS	Brain Substantia Nigra	brain
34	chr7:26903400-26904800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:26903400-26904800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:26903400-26904800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:26903400-26904800	Active TSS	Esophagus	oesophagus
38	chr7:26903400-26904800	Active TSS	Lung	lung
39	chr7:26903400-26904800	Active TSS	Pancreas	Pancrea
40	chr7:26903400-26904800	Active TSS	Small Intestine	intestine
41	chr7:26903400-26904800	Active TSS	Spleen	Spleen
42	chr7:26903400-26904800	Active TSS	A549	lung
43	chr7:26903400-26904800	Active TSS	HSMMtube	muscle
44	chr7:26903400-26905000	Active TSS	H9 Cell Line	embryonic stem cell
45	chr7:26903400-26905000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:26903400-26905000	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr7:26903400-26905000	Active TSS	Liver	Liver
48	chr7:26903400-26905000	Active TSS	Brain Angular Gyrus	brain
49	chr7:26903400-26905000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
50	chr7:26903400-26905000	Active TSS	Brain Cingulate Gyrus	brain

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