Variant report

Variant	rs12700755
Chromosome Location	chr7:26762452-26762453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 255 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs10085721	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10224133	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10227140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10227231	1.00[CHB][hapmap]
rs10227673	1.00[CHB][hapmap]
rs10227898	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10231161	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10232697	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10232770	0.95[EUR][1000 genomes]
rs10232778	0.96[EUR][1000 genomes]
rs10237921	0.84[ASN][1000 genomes]
rs10238253	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10239608	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10241952	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10242572	1.00[CHB][hapmap]
rs1024454	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10245162	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10245367	0.84[ASN][1000 genomes]
rs10246641	0.84[ASN][1000 genomes]
rs10247509	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249824	0.82[ASN][1000 genomes]
rs10250223	0.86[ASN][1000 genomes]
rs10255249	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10256250	1.00[CHB][hapmap]
rs10256561	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10256799	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10261915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10263118	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10267950	1.00[CHB][hapmap]
rs10269731	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10270187	1.00[CHB][hapmap]
rs10272190	1.00[CHB][hapmap]
rs10272457	1.00[CHB][hapmap]
rs10273468	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10276471	1.00[CHB][hapmap]
rs10276636	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10281261	1.00[CHB][hapmap]
rs1030644	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486478	0.88[CHB][hapmap]
rs10486483	1.00[CHB][hapmap]
rs10486485	1.00[CHB][hapmap]
rs10807834	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951145	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10951149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1123156	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1123157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1123158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11764558	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs11770043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11770344	0.82[CEU][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11772673	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11773029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11773050	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532339	0.84[ASN][1000 genomes]
rs12532796	1.00[CHB][hapmap]
rs12534899	1.00[CHB][hapmap]
rs12535078	0.84[ASN][1000 genomes]
rs12535784	1.00[CHB][hapmap]
rs12536560	1.00[CHB][hapmap]
rs12537323	1.00[CHB][hapmap]
rs12540388	1.00[CHB][hapmap]
rs12668948	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700754	0.83[CEU][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12700756	0.82[EUR][1000 genomes]
rs12700757	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs12700758	0.92[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12700759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700760	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12700762	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs13186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13229947	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs13234201	0.91[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs13234336	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1327988	1.00[CHB][hapmap]
rs1327989	1.00[CHB][hapmap]
rs13438513	1.00[CHB][hapmap]
rs13438514	1.00[CHB][hapmap]
rs1468203	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1548022	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1548478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548481	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17315775	1.00[CHB][hapmap]
rs17315929	1.00[CHB][hapmap]
rs17323934	1.00[CHB][hapmap]
rs17372780	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1859101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2015543	0.89[ASN][1000 genomes]
rs2015649	0.85[AFR][1000 genomes]
rs2017794	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2023819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2030136	1.00[CHB][hapmap]
rs2031811	1.00[CHB][hapmap]
rs2082365	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2106905	1.00[CHB][hapmap]
rs212840	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs212842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212844	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212849	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212850	1.00[CHB][hapmap]
rs212851	0.81[CEU][hapmap]
rs212852	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs212853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212854	0.84[CEU][hapmap]
rs212855	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212857	1.00[CHB][hapmap]
rs212858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213527	0.88[YRI][hapmap]
rs2189016	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2189017	1.00[CHB][hapmap]
rs2189019	1.00[CHB][hapmap]
rs2237328	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299101	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2299102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2391359	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391362	1.00[CHB][hapmap]
rs2693665	0.80[CHB][hapmap]
rs2712242	1.00[CHB][hapmap]
rs2769365	0.92[JPT][hapmap]
rs28403911	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3757654	1.00[CHB][hapmap]
rs3801803	1.00[CHB][hapmap]
rs3801805	1.00[CHB][hapmap]
rs3801806	0.91[JPT][hapmap]
rs3801807	1.00[CHB][hapmap]
rs3801808	1.00[CHB][hapmap]
rs3801810	1.00[CHB][hapmap]
rs3801812	1.00[CHB][hapmap]
rs3801813	1.00[CHB][hapmap]
rs3801814	1.00[CHB][hapmap]
rs3801815	1.00[CHB][hapmap]
rs3801816	1.00[CHB][hapmap]
rs3801819	1.00[CHB][hapmap]
rs3801820	1.00[CHB][hapmap]
rs3801821	1.00[CHB][hapmap]
rs3801825	1.00[CHB][hapmap]
rs3801827	1.00[CHB][hapmap]
rs3801828	1.00[CHB][hapmap]
rs3801830	1.00[CHB][hapmap]
rs3801840	1.00[CHB][hapmap]
rs3801842	1.00[CHB][hapmap]
rs3801843	1.00[CHB][hapmap]
rs3801844	1.00[CHB][hapmap]
rs3801846	0.89[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3801847	0.86[ASN][1000 genomes]
rs3801848	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs3801850	1.00[CHB][hapmap]
rs3801853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801854	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801855	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801857	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3801860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3801864	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801866	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3801867	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3801868	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801872	0.85[CEU][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs3823932	1.00[CHB][hapmap]
rs3823933	1.00[CHB][hapmap]
rs3823934	1.00[CHB][hapmap]
rs3823936	1.00[CHB][hapmap]
rs3823939	0.86[ASN][1000 genomes]
rs4345466	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4512299	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4573150	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4719877	1.00[CHB][hapmap]
rs4719879	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4722628	0.82[CEU][hapmap]
rs4722630	1.00[CHB][hapmap]
rs4722631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4722633	0.89[ASN][1000 genomes]
rs4722634	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5012512	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs503110	0.92[JPT][hapmap]
rs55836768	0.84[ASN][1000 genomes]
rs55904994	0.84[ASN][1000 genomes]
rs56359409	0.84[ASN][1000 genomes]
rs570840	0.91[JPT][hapmap]
rs58988613	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs607099	0.91[JPT][hapmap]
rs6461961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461962	1.00[CHB][hapmap]
rs6461963	1.00[CHB][hapmap]
rs6461964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6461965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6461971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461973	0.84[ASN][1000 genomes]
rs6461974	0.80[ASN][1000 genomes]
rs6461975	0.83[ASN][1000 genomes]
rs6461979	1.00[CHB][hapmap]
rs667841	0.92[JPT][hapmap]
rs6943568	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6943623	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6944529	0.84[ASN][1000 genomes]
rs6948657	1.00[CHB][hapmap]
rs6951065	1.00[CHB][hapmap]
rs6964094	1.00[CHB][hapmap]
rs6964817	1.00[CHB][hapmap]
rs6965167	0.84[ASN][1000 genomes]
rs6970591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6971397	1.00[CHB][hapmap]
rs6972378	1.00[CHB][hapmap]
rs6973237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6978504	0.86[ASN][1000 genomes]
rs727449	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs727450	0.90[CHB][hapmap]
rs73065526	0.84[ASN][1000 genomes]
rs744611	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs744612	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7457076	1.00[CHB][hapmap]
rs763616	1.00[CHB][hapmap]
rs7777316	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777744	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7779604	0.84[ASN][1000 genomes]
rs7779843	0.84[ASN][1000 genomes]
rs7784206	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7784257	0.80[EUR][1000 genomes]
rs7784548	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7785832	1.00[CHB][hapmap]
rs7788165	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791513	1.00[CHB][hapmap]
rs7793663	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7794399	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7795074	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7795313	0.85[CEU][hapmap]
rs7798696	0.84[ASN][1000 genomes]
rs7799888	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7802771	0.82[CEU][hapmap]
rs7802852	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803699	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7804356	1.00[CHB][hapmap]
rs7805766	1.00[CHB][hapmap]
rs7807640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7810109	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7810127	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7811764	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891874	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs891875	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs891876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs934410	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9648018	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9648020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9648021	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9648330	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9648331	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9770851	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs989250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018125	chr7:26745074-26789814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12700755	SKAP2	cis	Whole Blood	GTEx

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26731800-26779200	Weak transcription	Spleen	Spleen
2	chr7:26732200-26765000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:26740400-26782400	Weak transcription	Fetal Intestine Small	intestine
4	chr7:26745000-26780800	Weak transcription	Aorta	Aorta
5	chr7:26745400-26764600	Weak transcription	Adipose Nuclei	Adipose
6	chr7:26745800-26764600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:26746200-26780600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:26746600-26777400	Weak transcription	Lung	lung
9	chr7:26747800-26762800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:26748000-26764800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:26749000-26762600	Weak transcription	GM12878-XiMat	blood
12	chr7:26749200-26779600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:26749600-26781000	Weak transcription	NHEK	skin
14	chr7:26749800-26762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:26753600-26782200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:26754200-26780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:26754400-26782400	Weak transcription	Fetal Stomach	stomach
19	chr7:26754600-26780200	Weak transcription	NHLF	lung
20	chr7:26754800-26777000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:26754800-26783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:26755600-26782400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:26756200-26776800	Weak transcription	Dnd41	blood
24	chr7:26756600-26780600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:26756800-26763600	Weak transcription	Gastric	stomach
26	chr7:26757000-26762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:26758400-26767200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:26758400-26780800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:26758600-26767400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr7:26759400-26775800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:26760200-26765000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:26760400-26765400	Weak transcription	Primary B cells from cord blood	blood
33	chr7:26760600-26762800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr7:26760800-26763600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:26761000-26762800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:26761000-26763400	Weak transcription	Hela-S3	cervix
37	chr7:26761600-26766800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:26762200-26763200	Enhancers	Fetal Muscle Trunk	muscle
39	chr7:26762400-26762600	Enhancers	Fetal Kidney	kidney
40	chr7:26762400-26762800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:26762400-26763000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links