Variant report

Variant	rs55649724
Chromosome Location	chr7:26804005-26804006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10215738	0.83[ASN][1000 genomes]
rs10224133	0.85[AFR][1000 genomes]
rs10225924	0.86[ASN][1000 genomes]
rs10227898	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10229837	0.86[ASN][1000 genomes]
rs10232697	0.87[AFR][1000 genomes]
rs10232770	0.88[AFR][1000 genomes]
rs10232778	0.88[AFR][1000 genomes]
rs1023712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241952	0.87[AFR][1000 genomes]
rs10244986	0.86[ASN][1000 genomes]
rs10262414	0.86[ASN][1000 genomes]
rs10267950	0.86[ASN][1000 genomes]
rs10272301	0.86[ASN][1000 genomes]
rs10272303	0.86[ASN][1000 genomes]
rs10275896	0.86[ASN][1000 genomes]
rs10276471	0.86[ASN][1000 genomes]
rs10276636	0.89[AFR][1000 genomes]
rs1030648	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486478	0.85[ASN][1000 genomes]
rs10951146	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951149	0.86[AFR][1000 genomes]
rs1123156	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1123157	0.83[AFR][1000 genomes]
rs1123158	0.83[AFR][1000 genomes]
rs11773029	0.87[AFR][1000 genomes]
rs11773050	0.86[AFR][1000 genomes]
rs11973332	0.90[AFR][1000 genomes]
rs11977233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980739	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333525	0.86[ASN][1000 genomes]
rs12532199	0.86[ASN][1000 genomes]
rs12532395	0.86[ASN][1000 genomes]
rs12532796	0.86[ASN][1000 genomes]
rs12536560	0.86[ASN][1000 genomes]
rs12537014	0.85[ASN][1000 genomes]
rs12537323	0.86[ASN][1000 genomes]
rs12539719	0.86[ASN][1000 genomes]
rs12700758	0.87[AFR][1000 genomes]
rs12700760	0.87[AFR][1000 genomes]
rs13229947	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1327988	0.86[ASN][1000 genomes]
rs1327989	0.86[ASN][1000 genomes]
rs13438513	0.83[ASN][1000 genomes]
rs1468203	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1548478	0.85[AFR][1000 genomes]
rs1548481	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17315334	0.86[ASN][1000 genomes]
rs17315775	0.86[ASN][1000 genomes]
rs17372780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859101	0.87[AFR][1000 genomes]
rs2015649	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2189016	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2189019	0.93[ASN][1000 genomes]
rs2391359	0.87[AFR][1000 genomes]
rs2391360	0.86[AFR][1000 genomes]
rs28404962	0.86[ASN][1000 genomes]
rs28617235	0.86[ASN][1000 genomes]
rs28733208	0.86[ASN][1000 genomes]
rs28806787	0.86[ASN][1000 genomes]
rs3801825	0.86[ASN][1000 genomes]
rs3801826	0.86[ASN][1000 genomes]
rs3801827	0.86[ASN][1000 genomes]
rs3801828	0.86[ASN][1000 genomes]
rs3801829	0.86[ASN][1000 genomes]
rs3801830	0.86[ASN][1000 genomes]
rs3801831	0.86[ASN][1000 genomes]
rs3801832	0.85[ASN][1000 genomes]
rs3801833	0.86[ASN][1000 genomes]
rs3801834	0.86[ASN][1000 genomes]
rs3801836	0.85[ASN][1000 genomes]
rs3801837	0.85[ASN][1000 genomes]
rs3801840	0.86[ASN][1000 genomes]
rs3801842	0.86[ASN][1000 genomes]
rs3801843	0.86[ASN][1000 genomes]
rs3801844	0.86[ASN][1000 genomes]
rs3801850	0.86[ASN][1000 genomes]
rs3801853	0.87[AFR][1000 genomes]
rs3801854	0.87[AFR][1000 genomes]
rs3801855	0.86[AFR][1000 genomes]
rs3801864	0.87[AFR][1000 genomes]
rs3801866	0.87[AFR][1000 genomes]
rs3801867	0.87[AFR][1000 genomes]
rs3823929	0.86[ASN][1000 genomes]
rs3823930	0.86[ASN][1000 genomes]
rs3823931	0.86[ASN][1000 genomes]
rs3823932	0.86[ASN][1000 genomes]
rs3823933	0.86[ASN][1000 genomes]
rs3823934	0.86[ASN][1000 genomes]
rs3823936	0.86[ASN][1000 genomes]
rs3823938	0.86[ASN][1000 genomes]
rs4345466	0.85[AFR][1000 genomes]
rs4512299	0.86[AFR][1000 genomes]
rs4722641	0.86[ASN][1000 genomes]
rs4722643	0.86[ASN][1000 genomes]
rs4722644	0.86[ASN][1000 genomes]
rs55959127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56374720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57135974	0.86[ASN][1000 genomes]
rs58760954	0.86[ASN][1000 genomes]
rs61609910	0.90[AFR][1000 genomes]
rs6461970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6943568	0.87[AFR][1000 genomes]
rs6943623	0.82[AFR][1000 genomes]
rs6948584	0.86[ASN][1000 genomes]
rs6948657	0.86[ASN][1000 genomes]
rs6956088	0.86[ASN][1000 genomes]
rs6964094	0.86[ASN][1000 genomes]
rs6973237	0.87[AFR][1000 genomes]
rs6978504	0.93[EUR][1000 genomes]
rs727449	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73061889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73061894	0.93[ASN][1000 genomes]
rs73063604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065504	0.86[ASN][1000 genomes]
rs73065517	0.86[ASN][1000 genomes]
rs73065521	0.86[ASN][1000 genomes]
rs73067435	0.86[ASN][1000 genomes]
rs73067437	0.86[ASN][1000 genomes]
rs73067443	0.85[ASN][1000 genomes]
rs73067456	0.86[ASN][1000 genomes]
rs73067472	0.86[ASN][1000 genomes]
rs73067475	0.86[ASN][1000 genomes]
rs73067476	0.86[ASN][1000 genomes]
rs73067479	0.86[ASN][1000 genomes]
rs73683510	0.93[AFR][1000 genomes]
rs744611	0.87[AFR][1000 genomes]
rs744612	0.86[AFR][1000 genomes]
rs763616	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777316	0.87[AFR][1000 genomes]
rs7777744	0.87[AFR][1000 genomes]
rs7782621	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7785832	0.86[ASN][1000 genomes]
rs7793663	0.86[AFR][1000 genomes]
rs7795074	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7802688	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7802715	0.81[ASN][1000 genomes]
rs7803699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs891875	0.87[AFR][1000 genomes]
rs891876	0.87[AFR][1000 genomes]
rs9648019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9648021	0.83[AFR][1000 genomes]
rs9648331	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26750400-26812000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:26779600-26810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:26779800-26809000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26781000-26809200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:26796000-26808800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:26797800-26809400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26797800-26812000	Weak transcription	Fetal Lung	lung
8	chr7:26798200-26809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:26799600-26809400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:26799800-26812000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:26800800-26809400	Weak transcription	Primary hematopoietic stem cells	blood

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