Variant report
Variant | rs6945712 |
---|---|
Chromosome Location | chr7:27444732-27444733 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000243766 | Chromatin interaction |
ENSG00000106031 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10259618 | 1.00[AMR][1000 genomes] |
rs28361569 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361570 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361571 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361572 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361573 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361574 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361575 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361578 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28361580 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28398560 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6945853 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6965710 | 1.00[ASW][hapmap] |
rs6966266 | 0.96[AFR][1000 genomes] |
rs73283955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283957 | 1.00[AMR][1000 genomes] |
rs73283965 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283968 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283969 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283972 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283978 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73283985 | 1.00[AMR][1000 genomes] |
rs7784618 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7784783 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7784973 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
2 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:27443400-27444800 | Enhancers | Stomach Mucosa | stomach |