Variant report

Variant	rs73283955
Chromosome Location	chr7:27445562-27445563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10259618	1.00[AMR][1000 genomes]
rs28361569	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361570	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361572	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361573	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28361580	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6945712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6945853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966266	0.96[AFR][1000 genomes]
rs73283957	1.00[AMR][1000 genomes]
rs73283965	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283968	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283972	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283985	1.00[AMR][1000 genomes]
rs7784618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7784973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27444800-27458000	Weak transcription	Pancreas	Pancrea
2	chr7:27444800-27458000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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