Variant report

Variant	rs6946097
Chromosome Location	chr7:150064866-150064867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IKZF1	chr7:150064854-150065387	GM12878	blood:	n/a	n/a
2	JUND	chr7:150064857-150065857	MCF-7	breast:	n/a	chr7:150065148-150065159 chr7:150065151-150065158 chr7:150065148-150065159 chr7:150065149-150065158
3	MYC	chr7:150064797-150066853	K562	blood:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
4	POLR2A	chr7:150064747-150065432	SK-N-MC	brain:	n/a	n/a
5	IRF1	chr7:150064441-150066185	K562	blood:	n/a	n/a
6	NFIC	chr7:150064836-150066016	ECC-1	luminal epithelium:	n/a	chr7:150065263-150065279 chr7:150065263-150065280
7	MYC	chr7:150064768-150067169	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
8	TCF12	chr7:150064843-150067004	A549	lung:	n/a	chr7:150066360-150066370 chr7:150066361-150066368 chr7:150066393-150066401 chr7:150065721-150065731
9	JUND	chr7:150064816-150065350	Hela-S3	cervix:	n/a	chr7:150065148-150065159 chr7:150065151-150065158 chr7:150065148-150065159 chr7:150065149-150065158
10	MYC	chr7:150064823-150064888	K562	blood:	n/a	n/a
11	TBP	chr7:150064834-150065409	Hela-S3	cervix:	n/a	n/a
12	MAX	chr7:150064864-150066921	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
13	MAX	chr7:150064815-150067189	A549	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
14	MAX	chr7:150064788-150066917	HCT-116	colon:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
15	MYC	chr7:150064837-150066889	NB4	blood:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
16	MAX	chr7:150064845-150067148	HepG2	liver:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
17	EP300	chr7:150064807-150066524	ECC-1	luminal epithelium:	n/a	chr7:150066306-150066322 chr7:150065149-150065158 chr7:150065456-150065472
18	POLR2A	chr7:150064808-150069359	K562	blood:	n/a	n/a
19	MAX	chr7:150064861-150066929	ECC-1	luminal epithelium:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
20	FOS	chr7:150064748-150066001	MCF10A-Er-Src	breast:	n/a	chr7:150065151-150065158 chr7:150065148-150065159 chr7:150065148-150065159 chr7:150065149-150065158
21	MYC	chr7:150064635-150065914	MCF10A-Er-Src	breast:	n/a	chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
22	POLR2A	chr7:150064841-150068822	HL-60	blood:	n/a	n/a
23	ZNF384	chr7:150064172-150065309	GM12878	blood:	n/a	n/a
24	FOSL2	chr7:150064858-150065475	MCF-7	breast:	n/a	chr7:150065151-150065158 chr7:150065148-150065159 chr7:150065147-150065158 chr7:150065149-150065158
25	MXI1	chr7:150064165-150068175	SK-N-SH	brain:	n/a	chr7:150068088-150068103 chr7:150065688-150065703 chr7:150065860-150065869 chr7:150068090-150068105 chr7:150065686-150065701
26	USF2	chr7:150064844-150066627	Hela-S3	cervix:	n/a	chr7:150065859-150065870 chr7:150066358-150066374
27	EP300	chr7:150064563-150065484	GM12878	blood:	n/a	chr7:150065149-150065158 chr7:150065456-150065472
28	TCF12	chr7:150064836-150065617	ECC-1	luminal epithelium:	n/a	n/a
29	MYC	chr7:150064832-150066855	K562	blood:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
30	MYC	chr7:150064773-150066738	MCF10A-Er-Src	breast:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
31	CEBPB	chr7:150064858-150065430	Hela-S3	cervix:	n/a	chr7:150064998-150065011
32	NR2F2	chr7:150064848-150065935	K562	blood:	n/a	n/a
33	TEAD4	chr7:150064857-150067235	K562	blood:	n/a	n/a
34	TCF12	chr7:150064727-150066404	MCF-7	breast:	n/a	chr7:150066360-150066370 chr7:150066361-150066368 chr7:150066393-150066401 chr7:150065721-150065731
35	POLR2A	chr7:150064860-150068447	GM12891	blood:	n/a	n/a
36	HCFC1	chr7:150064741-150066983	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr7:150064808-150068782	HepG2	liver:	n/a	n/a
38	RCOR1	chr7:150064690-150068362	IMR90	lung:	n/a	n/a
39	MAX	chr7:150064804-150066863	HCT-116	colon:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
40	EP300	chr7:150064806-150067196	GM12878	blood:	n/a	chr7:150066306-150066322 chr7:150065149-150065158 chr7:150066728-150066742 chr7:150065456-150065472
41	MAX	chr7:150064795-150066510	MCF-7	breast:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
42	POLR2A	chr7:150064783-150066812	MCF10A-Er-Src	breast:	n/a	n/a
43	MAZ	chr7:150064836-150067206	IMR90	lung:	n/a	chr7:150066414-150066424 chr7:150065597-150065604 chr7:150065226-150065233 chr7:150065225-150065234 chr7:150065861-150065870 chr7:150065861-150065870 chr7:150065594-150065604 chr7:150065688-150065697 chr7:150065692-150065701 chr7:150065595-150065604 chr7:150065223-150065232 chr7:150065860-150065871
44	IRF1	chr7:150064412-150064937	K562	blood:	n/a	n/a
45	USF1	chr7:150064854-150066790	HCT-116	colon:	n/a	chr7:150066358-150066374
46	POLR2A	chr7:150064843-150076606	K562	blood:	n/a	n/a
47	NFIC	chr7:150064863-150066614	ECC-1	luminal epithelium:	n/a	chr7:150065263-150065279 chr7:150065263-150065280
48	TBL1XR1	chr7:150064842-150066856	GM12878	blood:	n/a	n/a
49	GABPA	chr7:150064840-150065514	HL-60	blood:	n/a	n/a
50	FOXM1	chr7:150064836-150065604	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:149570103..149572096-chr7:150064199..150066897,3	MCF-7	breast:
2	chr7:150064606..150067565-chr7:150746513..150748694,2	MCF-7	breast:
3	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
4	chr7:150034163..150038835-chr7:150063325..150067223,6	MCF-7	breast:
5	chr7:150016171..150021897-chr7:150062899..150068795,19	MCF-7	breast:
6	chr7:72933491..72935453-chr7:150062419..150065143,2	MCF-7	breast:
7	chr7:150027152..150029852-chr7:150062347..150064947,2	K562	blood:
8	chr7:150018458..150023402-chr7:150064103..150067772,7	MCF-7	breast:
9	chr7:150017186..150022010-chr7:150063447..150067622,10	K562	blood:
10	chr7:150064404..150066708-chr7:150128401..150130893,2	MCF-7	breast:
11	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:
12	chr7:150017186..150022141-chr7:150063447..150068849,12	K562	blood:
13	chr7:150038539..150040315-chr7:150063994..150067487,3	MCF-7	breast:
14	chr7:150064708..150066870-chr7:150673905..150675576,2	MCF-7	breast:

Variant related genes	Relation type
ZNF775	TF binding region
REPIN1	TF binding region
ENSG00000106538	Chromatin interaction
ENSG00000213199	Chromatin interaction
ENSG00000106526	Chromatin interaction
ENSG00000204934	Chromatin interaction
ENSG00000171130	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000261305	Chromatin interaction
ENSG00000127399	Chromatin interaction
ENSG00000055118	Chromatin interaction
ENSG00000242258	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10248975	0.88[EUR][1000 genomes]
rs10259796	0.81[CEU][hapmap]
rs10264443	0.88[EUR][1000 genomes]
rs10271869	0.86[EUR][1000 genomes]
rs10278277	0.88[EUR][1000 genomes]
rs10282458	0.90[CEU][hapmap]
rs1047575	0.84[CEU][hapmap]
rs10480297	0.89[ASN][1000 genomes]
rs1051760	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1051764	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1051823	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10952250	0.90[CEU][hapmap]
rs1132261	0.90[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11762223	0.86[ASN][1000 genomes]
rs11764936	0.90[CEU][hapmap]
rs11767409	0.80[AMR][1000 genomes]
rs11768108	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769348	0.90[CEU][hapmap]
rs11771677	0.85[EUR][1000 genomes]
rs11771693	0.83[EUR][1000 genomes]
rs11773825	0.86[ASN][1000 genomes]
rs11972067	0.85[EUR][1000 genomes]
rs12703061	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13223702	0.80[AMR][1000 genomes]
rs13238964	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13307276	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17173681	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17173682	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17173702	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17173703	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1983440	0.85[CEU][hapmap]
rs1983441	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2190994	0.82[ASN][1000 genomes]
rs28398138	0.89[EUR][1000 genomes]
rs34311995	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34495356	0.80[AMR][1000 genomes]
rs34728606	0.80[AMR][1000 genomes]
rs35435439	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35635199	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35840727	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36035506	0.80[AMR][1000 genomes]
rs36069544	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3735165	0.87[EUR][1000 genomes]
rs3735166	0.84[EUR][1000 genomes]
rs3735167	0.84[CEU][hapmap]
rs3735169	0.89[CEU][hapmap]
rs3735170	0.89[CEU][hapmap]
rs3735171	0.90[CEU][hapmap]
rs3735172	0.90[CEU][hapmap]
rs3757423	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3757424	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3757425	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4554381	0.85[CEU][hapmap]
rs57274670	0.84[ASN][1000 genomes]
rs6722	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6946153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956002	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6964110	0.90[CEU][hapmap]
rs71537957	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71537958	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7800196	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv889459	chr7:150041610-150071464	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
17	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
18	nsv889460	chr7:150060163-150079459	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv889461	chr7:150060163-150081485	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
20	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6946097	LRRC61	cis	Skin Sun Exposed Lower leg	GTEx
rs6946097	C7orf29	Cis_1M	lymphoblastoid	RTeQTL
rs6946097	REPIN1	cis	Muscle Skeletal	GTEx
rs6946097	RARRES2	cis	multi-tissue	Pritchard

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150039200-150065000	Weak transcription	Right Atrium	heart
2	chr7:150053200-150065000	Enhancers	Fetal Thymus	thymus
3	chr7:150055200-150065000	Weak transcription	Spleen	Spleen
4	chr7:150059000-150065200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:150059200-150065000	Weak transcription	Psoas Muscle	Psoas
6	chr7:150059400-150065000	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:150059800-150065000	Weak transcription	Left Ventricle	heart
8	chr7:150060200-150065000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:150060200-150065000	Weak transcription	Fetal Heart	heart
10	chr7:150060400-150065000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:150060600-150065200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:150061000-150065000	Weak transcription	Fetal Stomach	stomach
13	chr7:150061200-150065000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr7:150061200-150065000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:150061400-150065000	Weak transcription	HSMM	muscle
16	chr7:150061600-150065000	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:150061600-150065000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:150061600-150065000	Weak transcription	Placenta	Placenta
19	chr7:150062400-150065000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr7:150062800-150065000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr7:150062800-150065000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr7:150062800-150065000	Enhancers	Fetal Intestine Small	intestine
23	chr7:150063000-150065200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr7:150063400-150065000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:150063600-150065000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr7:150063800-150065000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:150064000-150065000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:150064000-150065000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr7:150064000-150065000	Enhancers	Duodenum Mucosa	Duodenum
30	chr7:150064000-150065000	Enhancers	Fetal Muscle Leg	muscle
31	chr7:150064200-150065000	Enhancers	Adipose Nuclei	Adipose
32	chr7:150064200-150065000	Weak transcription	Pancreas	Pancrea
33	chr7:150064200-150065200	Enhancers	Stomach Mucosa	stomach
34	chr7:150064400-150065000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr7:150064400-150065400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr7:150064400-150065400	Flanking Active TSS	Dnd41	blood
37	chr7:150064400-150065400	Flanking Active TSS	GM12878-XiMat	blood
38	chr7:150064600-150065000	Enhancers	Brain Germinal Matrix	brain
39	chr7:150064600-150065000	Enhancers	Fetal Lung	lung
40	chr7:150064600-150065400	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr7:150064600-150065800	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr7:150064600-150065800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:150064600-150067800	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr7:150064800-150065000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr7:150064800-150065000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:150064800-150065000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:150064800-150065000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:150064800-150065000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:150064800-150065000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr7:150064800-150065000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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