Variant report

Variant	rs6946110
Chromosome Location	chr7:26407485-26407486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26238011..26242916-chr7:26400117..26407916,12	MCF-7	breast:
2	chr7:26329968..26332567-chr7:26407158..26410797,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000086300	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17153630	1.00[EUR][1000 genomes]
rs17153639	1.00[EUR][1000 genomes]
rs17153646	1.00[EUR][1000 genomes]
rs57271652	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57468306	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58435943	1.00[EUR][1000 genomes]
rs73285295	1.00[EUR][1000 genomes]
rs73683300	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7800956	1.00[EUR][1000 genomes]
rs7801068	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:26387400-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:26387800-26409400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:26388000-26409400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:26397000-26409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:26398600-26415400	Weak transcription	HMEC	breast
10	chr7:26402600-26415200	Enhancers	Liver	Liver
11	chr7:26403200-26407600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:26403800-26415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:26404800-26407600	Enhancers	Pancreas	Pancrea
14	chr7:26404800-26409400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:26404800-26409400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:26404800-26409600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:26404800-26411200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:26404800-26414000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:26404800-26415200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:26405000-26407600	Strong transcription	Primary hematopoietic stem cells	blood
21	chr7:26405000-26407600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:26405000-26409000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr7:26405000-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:26405000-26409400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:26405200-26407600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:26405200-26407600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:26405200-26407600	Strong transcription	Fetal Thymus	thymus
28	chr7:26405200-26408000	Strong transcription	Primary B cells from cord blood	blood
29	chr7:26405200-26408600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:26405200-26409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:26405200-26413800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:26405200-26414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:26405400-26409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:26405400-26409000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr7:26405400-26409400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:26405400-26413800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:26405400-26414600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:26405800-26407600	Strong transcription	GM12878-XiMat	blood
39	chr7:26405800-26408200	Weak transcription	Fetal Kidney	kidney
40	chr7:26405800-26409200	Weak transcription	HUVEC	blood vessel
41	chr7:26405800-26414600	Weak transcription	K562	blood
42	chr7:26406000-26409400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:26406200-26409400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:26406200-26409400	Weak transcription	Fetal Intestine Large	intestine
45	chr7:26406400-26409400	Weak transcription	Fetal Lung	lung
46	chr7:26407000-26409000	Weak transcription	Dnd41	blood
47	chr7:26407000-26409400	Weak transcription	Adipose Nuclei	Adipose
48	chr7:26407000-26409400	Weak transcription	Brain Angular Gyrus	brain
49	chr7:26407000-26411200	Weak transcription	Fetal Intestine Small	intestine
50	chr7:26407200-26409400	Weak transcription	Primary T cells from cord blood	blood

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